Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin

Senthil K. Murugapiran; Marcel Huntemann; Chia Lin Wei; James Han; John C. Detter; Cliff S. Han; Tracy H. Erkkila; Hazuki Teshima; Amy Chen; Nikos Kyrpides; Konstantinos Mavrommatis; Victor Markowitz; Ernest Szeto; Natalia Ivanova; Ioanna Pagani; Jenny Lam; Austin I. McDonald; Jeremy A. Dodsworth; Amrita Pati; Lynne Goodwin; Lin Peters; Sam Pitluck; Tanja Woyke; Brian P. Hedlund

doi:10.1128/genomeA.00106-12

Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin

Senthil K. Murugapiran
, Marcel Huntemann
, Chia Lin Wei
, James Han
, John C. Detter
, Cliff S. Han
, Tracy H. Erkkila
, Hazuki Teshima
, Amy Chen
, Nikos Kyrpides
, Konstantinos Mavrommatis
, Victor Markowitz
, Ernest Szeto
, Natalia Ivanova
, Ioanna Pagani
, Jenny Lam
, Austin I. McDonald
, Jeremy A. Dodsworth
, Amrita Pati
, Lynne Goodwin

Lin Peters, Sam Pitluck, Tanja Woyke, Brian P. Hedlund

Plant and Microbial Biology

Research output: Contribution to journal › Article › peer-review

20 Scopus citations

Abstract

The strains Thermus oshimai JL-2 and Thermus thermophilus JL-18 each have a circular chromosome, 2.07 Mb and 1.9 Mb in size, respectively, and each has two plasmids ranging from 0.27 Mb to 57.2 kb. The megaplasmid of each strain contains a gene cluster for the reduction of nitrate to nitrous oxide, consistent with their incomplete denitrification phenotypes.

Original language	English (US)
Article number	e00106-12
Journal	Genome Announcements
Volume	1
Issue number	1
DOIs	https://doi.org/10.1128/genomeA.00106-12
State	Published - 2013

Bibliographical note

Publisher Copyright:
© 2013 Murugapiran et al.

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Murugapiran, S. K., Huntemann, M., Wei, C. L., Han, J., Detter, J. C., Han, C. S., Erkkila, T. H., Teshima, H., Chen, A., Kyrpides, N., Mavrommatis, K., Markowitz, V., Szeto, E., Ivanova, N., Pagani, I., Lam, J., McDonald, A. I., Dodsworth, J. A., Pati, A., ... Hedlund, B. P. (2013). Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin. Genome Announcements, 1(1), Article e00106-12. https://doi.org/10.1128/genomeA.00106-12

Murugapiran, SK, Huntemann, M, Wei, CL, Han, J, Detter, JC, Han, CS, Erkkila, TH, Teshima, H, Chen, A, Kyrpides, N, Mavrommatis, K, Markowitz, V, Szeto, E, Ivanova, N, Pagani, I, Lam, J, McDonald, AI, Dodsworth, JA, Pati, A, Goodwin, L, Peters, L, Pitluck, S, Woyke, T & Hedlund, BP 2013, 'Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin', Genome Announcements, vol. 1, no. 1, e00106-12. https://doi.org/10.1128/genomeA.00106-12

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title = "Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin",

abstract = "The strains Thermus oshimai JL-2 and Thermus thermophilus JL-18 each have a circular chromosome, 2.07 Mb and 1.9 Mb in size, respectively, and each has two plasmids ranging from 0.27 Mb to 57.2 kb. The megaplasmid of each strain contains a gene cluster for the reduction of nitrate to nitrous oxide, consistent with their incomplete denitrification phenotypes.",

author = "Murugapiran, \{Senthil K.\} and Marcel Huntemann and Wei, \{Chia Lin\} and James Han and Detter, \{John C.\} and Han, \{Cliff S.\} and Erkkila, \{Tracy H.\} and Hazuki Teshima and Amy Chen and Nikos Kyrpides and Konstantinos Mavrommatis and Victor Markowitz and Ernest Szeto and Natalia Ivanova and Ioanna Pagani and Jenny Lam and McDonald, \{Austin I.\} and Dodsworth, \{Jeremy A.\} and Amrita Pati and Lynne Goodwin and Lin Peters and Sam Pitluck and Tanja Woyke and Hedlund, \{Brian P.\}",

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doi = "10.1128/genomeA.00106-12",

language = "English (US)",

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AU - Murugapiran, Senthil K.

AU - Huntemann, Marcel

AU - Wei, Chia Lin

AU - Han, James

AU - Detter, John C.

AU - Han, Cliff S.

AU - Erkkila, Tracy H.

AU - Teshima, Hazuki

AU - Chen, Amy

AU - Kyrpides, Nikos

AU - Mavrommatis, Konstantinos

AU - Markowitz, Victor

AU - Szeto, Ernest

AU - Ivanova, Natalia

AU - Pagani, Ioanna

AU - Lam, Jenny

AU - McDonald, Austin I.

AU - Dodsworth, Jeremy A.

AU - Pati, Amrita

AU - Goodwin, Lynne

AU - Peters, Lin

AU - Pitluck, Sam

AU - Woyke, Tanja

AU - Hedlund, Brian P.

PY - 2013

Y1 - 2013

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AB - The strains Thermus oshimai JL-2 and Thermus thermophilus JL-18 each have a circular chromosome, 2.07 Mb and 1.9 Mb in size, respectively, and each has two plasmids ranging from 0.27 Mb to 57.2 kb. The megaplasmid of each strain contains a gene cluster for the reduction of nitrate to nitrous oxide, consistent with their incomplete denitrification phenotypes.

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Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin

Abstract

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