Video-rate volumetric functional imaging of the brain at synaptic resolution

Rongwen Lu, Wenzhi Sun, Yajie Liang, Aaron Kerlin, Jens Bierfeld, Johannes D. Seelig, Daniel E. Wilson, Benjamin Scholl, Boaz Mohar, Masashi Tanimoto, Minoru Koyama, David Fitzpatrick, Michael B. Orger, Na Ji

Research output: Contribution to journalArticlepeer-review

188 Scopus citations


Neurons and neural networks often extend hundreds of micrometers in three dimensions. Capturing the calcium transients associated with their activity requires volume imaging methods with subsecond temporal resolution. Such speed is a challenge for conventional two-photon laser-scanning microscopy, because it depends on serial focal scanning in 3D and indicators with limited brightness. Here we present an optical module that is easily integrated into standard two-photon laser-scanning microscopes to generate an axially elongated Bessel focus, which when scanned in 2D turns frame rate into volume rate. We demonstrated the power of this approach in enabling discoveries for neurobiology by imaging the calcium dynamics of volumes of neurons and synapses in fruit flies, zebrafish larvae, mice and ferrets in vivo. Calcium signals in objects as small as dendritic spines could be resolved at video rates, provided that the samples were sparsely labeled to limit overlap in their axially projected images.

Original languageEnglish (US)
Pages (from-to)620-628
Number of pages9
JournalNature neuroscience
Issue number4
StatePublished - Mar 29 2017
Externally publishedYes

Bibliographical note

Funding Information:
R.L., W.S., Y.L., A.K., J.D.S., B.M., M.T., M.K. and N.J. were supported by the Howard Hughes Medical Institute M.T. was also supported by the Japanese Society for the Promotion of Science (S2602 and 15K06708). D.E.W., B.S. and D.F. were supported by the National Eye Institute of the NIH under Grant 2 R01 EY011488-17. J.B. was supported by a PhD fellowship from the Portuguese Fundacao para a Ciencia e a Tecnologia. M.B.O was supported by the Champalimaud Foundation and the Bial Foundation (185/12).

Publisher Copyright:
© 2017 Nature America, Inc., part of Springer Nature. All rights reserved.


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