Variable selection and estimation in causal inference using Bayesian spike and slab priors

Brandon Koch, David M. Vock, Julian Wolfson, Laura Boehm Vock

Research output: Contribution to journalArticlepeer-review

Abstract

Unbiased estimation of causal effects with observational data requires adjustment for confounding variables that are related to both the outcome and treatment assignment. Standard variable selection techniques aim to maximize predictive ability of the outcome model, but they ignore covariate associations with treatment and may not adjust for important confounders weakly associated to outcome. We propose a novel method for estimating causal effects that simultaneously considers models for both outcome and treatment, which we call the bilevel spike and slab causal estimator (BSSCE). By using a Bayesian formulation, BSSCE estimates the posterior distribution of all model parameters and provides straightforward and reliable inference. Spike and slab priors are used on each covariate coefficient which aim to minimize the mean squared error of the treatment effect estimator. Theoretical properties of the treatment effect estimator are derived justifying the prior used in BSSCE. Simulations show that BSSCE can substantially reduce mean squared error over numerous methods and performs especially well with large numbers of covariates, including situations where the number of covariates is greater than the sample size. We illustrate BSSCE by estimating the causal effect of vasoactive therapy vs. fluid resuscitation on hypotensive episode length for patients in the Multiparameter Intelligent Monitoring in Intensive Care III critical care database.

Original languageEnglish (US)
Pages (from-to)2445-2469
Number of pages25
JournalStatistical methods in medical research
Volume29
Issue number9
DOIs
StatePublished - Sep 1 2020

Bibliographical note

Publisher Copyright:
© The Author(s) 2020.

Keywords

  • Bayesian methods
  • causal inference
  • high-dimensional data
  • spike and slab
  • variable selection

PubMed: MeSH publication types

  • Journal Article
  • Research Support, N.I.H., Extramural

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