Validation of Reference Genes Across Populations of Aphis glycines (Hemiptera: Aphididae) for RT-qPCR Analysis of Gene Expression Related to Pyrethroid Detoxification

Rosa E. Lozano, Débora P. Paula, David A. Andow, Robert L. Koch

Research output: Contribution to journalArticlepeer-review

Abstract

Metabolic detoxification is a common mechanism of insecticide resistance, in which detoxifying enzyme genes are overexpressed. Aphis glycines Matsumura (Hemiptera: Aphididae) is one of the major soybean pests in the United States and has developed resistance to pyrethroid insecticides after almost two decades of use. To date, there are no validated reference genes to normalize expression of detoxification genes for pyrethroid resistance in A. glycines. From a literature review, a list was compiled of genes from 36 gene families (68 sequences) frequently used as reference genes in gene expression analysis in Hemiptera. Exon-exon junction primers were designed for the best alignment matches to a draft A. glycines genome and were assayed in a three-phase screening. The first screen eliminated nonamplifying primers. The second screen used nine A. glycines populations varying in resistance to pyrethroids and eliminated primers with inconsistent amplification or low amplification efficiency, and quantitatively assessed the stability of expression in the 14 remaining candidates using NormFinder and a generalization of BestKeeper. The third screen quantitatively validated these results on the best candidates. Six genes were identified with the greatest stability across technical and biological replication and the nine populations. The genes identified as the most suitable reference genes for the study of detoxifying enzymes related to pyrethroid resistance in soybean aphid were: Actin, RPL9 (ribosomal protein L9), RPS9 (ribosomal protein S9), AK (arginine kinase), RNAPol2 (RNA polymerase II), and RPL17 (ribosomal protein L17). Our findings will support studies related to insecticide resistance in A. glycines.

Original languageEnglish (US)
Pages (from-to)213-239
Number of pages27
JournalJournal of Entomological Science
Volume57
Issue number2
DOIs
StatePublished - Apr 1 2022

Bibliographical note

Funding Information:
We are grateful to Amelia Lindsey for providing a review of an earlier version of this paper, Lisa Behnken and Bruce Potter for helping to locate fields with soybean aphid infestations, and James Menger, Arthur Vieira, Mads Bartz, and Pheylan Anderson for assistance in the field and laboratory. This work was supported by the Minnesota Rapid Agricultural Response Program (RARF) and the USDA National Institute of Food & Agriculture (NIFA) (award no. 2019-68008-29892).

Publisher Copyright:
© 2022 Georgia Entomological Society Inc.. All rights reserved.

Keywords

  • P450
  • housekeeping genes
  • normalization
  • resistance
  • soybean aphid

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