Tuning of mRNA stability through altering 3′-UTR sequences generates distinct output expression in a synthetic circuit driven by p53 oscillations

Woo Seuk Koh, Joshua R. Porter, Eric Batchelor

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

Synthetic biological circuits that can generate outputs with distinct expression dynamics are useful for a variety of biomedical and industrial applications. We present a method to control output dynamics by altering output mRNA decay rates. Using oscillatory expression of the transcription factor p53 as the circuit regulator, we use two approaches for controlling target gene transcript degradation rates based on the output gene’s 3′-untranslated region (3′-UTR): introduction of copies of destabilizing AU-rich elements into the 3′-UTR or swapping in naturally occurring 3′-UTRs conferring different transcript stabilities. As a proof of principle, we apply both methods to control the expression dynamics of a fluorescent protein and visualize the circuit output dynamics in single living cells. We then use the naturally occurring 3′-UTR approach to restore apoptosis in a tunable manner in a cancer cell line deficient for caspase-3 expression. Our method can be readily adapted to regulate multiple outputs each with different expression dynamics under the control of a single naturally occurring or synthetically constructed biological oscillator.

Original languageEnglish (US)
Article number5976
JournalScientific reports
Volume9
Issue number1
DOIs
StatePublished - Dec 1 2019

Bibliographical note

Funding Information:
We thank M. Harton and R. Hanson for help throughout this project. We also thank J. Liu (NHGMS, NHLBI), the NCI Flow Cytometry Core Facility, and K. Wolcott for help with flow cytometry. This work was supported by funding from the Intramural Research Program of the Center for Cancer Research, National Cancer Institute, National Institutes of Health.

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