TrichOME: A comparative omics database for plant trichomes

Xinbin Dai, Guodong Wang, Dong Sik Yang, Yuhong Tang, Pierre Broun, M. David Marks, Lloyd W. Sumner, Richard A. Dixon, Patrick Xuechun Zhao

Research output: Contribution to journalArticlepeer-review

77 Scopus citations

Abstract

Plant secretory trichomes have a unique capacity for chemical synthesis and secretion and have been described as biofactories for the production of natural products. However, until recently, most trichome-specific metabolic pathways and genes involved in various trichome developmental stages have remained unknown. Furthermore, only a very limited amount of plant trichome genomics information is available in scattered databases. We present an integrated "omics" database, TrichOME, to facilitate the study of plant trichomes. The database hosts a large volume of functional omics data, including expressed sequence tag/unigene sequences, microarray hybridizations from both trichome and control tissues, mass spectrometry-based trichome metabolite profiles, and trichome-related genes curated from published literature. The expressed sequence tag/ unigene sequences have been annotated based upon sequence similarity with popular databases (e.g. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Transporter Classification Database). The unigenes, metabolites, curated genes, and probe sets have been mapped against each other to enable comparative analysis. The database also integrates bioinformatics tools with a focus on the mining of trichome-specific genes in unigenes and microarray-based gene expression profiles. TrichOME is a http://www.planttrichome.org.

Original languageEnglish (US)
Pages (from-to)44-54
Number of pages11
JournalPlant physiology
Volume152
Issue number1
DOIs
StatePublished - Jan 2010

Bibliographical note

Copyright:
Copyright 2018 Elsevier B.V., All rights reserved.

Fingerprint Dive into the research topics of 'TrichOME: A comparative omics database for plant trichomes'. Together they form a unique fingerprint.

Cite this