TimeView: For comparative gene expression analysis

Mugdha Gadgil, Sarika Mehra, Vivek Kapur, Wei Shou Hu

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

TimeView is a MATLAB® program that compares multiple temporal datasets from microarray experiments under two or more conditions, for example, temporal variation of cellular response upon exposure to different drugs. The current paucity of programs designed to efficiently compare and visualise gene expression profiles in such datasets led us to design TimeView, which also enhances data visualisation by plotting the expression profiles of a large number of genes on a single screen. Availability: TimeView is available free of charge to all users at http://hugroup.cems.umn.edu/Research/Genomics/Timeview/ timeview.htm. To use TimeView, users will require access to the commercial software MATLAB® (version 6.5). A help document is available on the TimeView website. Contact: Wei-Shou Hu (wshu@cems.umn.edu).

Original languageEnglish (US)
Pages (from-to)41-44
Number of pages4
JournalApplied Bioinformatics
Volume5
Issue number1
DOIs
StatePublished - 2006

Bibliographical note

Funding Information:
This work was supported in part by a grant from the National Institute of Health, USA (GM55850-05A1). The gifts from Merck Research Laboratories and Sankyo Co. for supporting the work of WSH are gratefully acknowledged. We would like to thank MSI for computing resources.

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