TY - JOUR
T1 - The future of legume genetic data resources
T2 - Challenges, opportunities, and priorities
AU - Bauchet, Guillaume J.
AU - Bett, Kirstin E.
AU - Cameron, Connor T.
AU - Campbell, Jacqueline D.
AU - Cannon, Ethalinda K.S.
AU - Cannon, Steven B.
AU - Carlson, Joseph W.
AU - Chan, Agnes
AU - Cleary, Alan
AU - Close, Timothy J.
AU - Cook, Douglas R.
AU - Cooksey, Amanda M.
AU - Coyne, Clarice
AU - Dash, Sudhansu
AU - Dickstein, Rebecca
AU - Farmer, Andrew D.
AU - Fernández-Baca, David
AU - Hokin, Samuel
AU - Jones, Elizabeth S.
AU - Kang, Yun
AU - Monteros, Maria J.
AU - Muñoz-Amatriaín, María
AU - Mysore, Kirankumar S.
AU - Pislariu, Catalina I.
AU - Richards, Chris
AU - Shi, Ainong
AU - Town, Christopher D.
AU - Udvardi, Michael
AU - von Wettberg, Eric Bishop
AU - Young, Nevin D.
AU - Zhao, Patrick X.
N1 - Publisher Copyright:
© 2019 The Authors. Legume Science published by Wiley Periodicals, Inc.
PY - 2019/12
Y1 - 2019/12
N2 - Legumes, comprising one of the largest, most diverse, and most economically important plant families, are the subject of vibrant research and development worldwide. Continued improvement of legume crops will benefit from the recent proliferation of genetic (including genomic) resources; but the diversity, scale, and complexity of these resources presents challenges to those managing and using them. A workshop held in March of 2019 addressed questions of data resources and priorities for the legumes. The workshop identified various needs and recommendations: (a) Develop strategies to effectively store, integrate, and relate genetic resources collected in different projects. (b) Leverage information collected across many legume species by standardizing data formats and ontologies, improving the state of metadata about datasets, and increasing use of the FAIR data principles. (c) Advocate for the critical role that curators exercise in integrating complex datasets into databases and adding high value metadata that enable downstream analytics and facilitate practical applications. (d) Implement standardized software and database development practices to best leverage limited developer time and expertise gained from the various legume (and other) species. (e) Develop tools and databases that can manage genetic information for the world's plant genetic resources, enabling efficient incorporation of important traits into breeding programs. (f) Centralize information on databases, tools, and training materials and establish funding streams to support training and outreach.
AB - Legumes, comprising one of the largest, most diverse, and most economically important plant families, are the subject of vibrant research and development worldwide. Continued improvement of legume crops will benefit from the recent proliferation of genetic (including genomic) resources; but the diversity, scale, and complexity of these resources presents challenges to those managing and using them. A workshop held in March of 2019 addressed questions of data resources and priorities for the legumes. The workshop identified various needs and recommendations: (a) Develop strategies to effectively store, integrate, and relate genetic resources collected in different projects. (b) Leverage information collected across many legume species by standardizing data formats and ontologies, improving the state of metadata about datasets, and increasing use of the FAIR data principles. (c) Advocate for the critical role that curators exercise in integrating complex datasets into databases and adding high value metadata that enable downstream analytics and facilitate practical applications. (d) Implement standardized software and database development practices to best leverage limited developer time and expertise gained from the various legume (and other) species. (e) Develop tools and databases that can manage genetic information for the world's plant genetic resources, enabling efficient incorporation of important traits into breeding programs. (f) Centralize information on databases, tools, and training materials and establish funding streams to support training and outreach.
KW - breeding
KW - database
KW - genotyping
KW - informatics
KW - international collaboration
KW - legumes
KW - reference genomes
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U2 - 10.1002/leg3.16
DO - 10.1002/leg3.16
M3 - Comment/debate
AN - SCOPUS:85084354432
SN - 2639-6181
VL - 1
JO - Legume Science
JF - Legume Science
IS - 1
M1 - e16
ER -