Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Baojun Wu; Jill Gaskell; Jiwei Zhang; Christina Toapanta; Steven Ahrendt; Igor V. Grigoriev; Robert A. Blanchette; Jonathan S Schilling; Emma Master; Daniel Cullen; David S. Hibbett

doi:10.1038/s41396-021-01156-w

Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Baojun Wu, Jill Gaskell, Jiwei Zhang, Christina Toapanta, Steven Ahrendt, Igor V. Grigoriev, Robert A. Blanchette, Jonathan S Schilling, Emma Master, Daniel Cullen, David S. Hibbett

Research output: Contribution to journal › Comment/debate › peer-review

Abstract

In the article, we, the authors, reported (1). differential gene expression and (2) RNA editing by five species of wood-decaying basidiomycetes. After publication, we discovered that the RNA editing results are artifactual, because we mapped RNAseq reads only to the assembled reference genome, rather than mapping both RNAseq reads and unassembled genomic DNA reads to the assembled reference genome. For this reason, we retract the article. A technical note describing the source of the artifact has been published in ISME Communications [1]. The gene expression results reported are not affected. All authors have agreed to this retraction.

Original language	English (US)
Pages (from-to)	322
Number of pages	1
Journal	ISME Journal
Volume	16
Issue number	1
DOIs	https://doi.org/10.1038/s41396-021-01156-w
State	Published - Jan 2022

Bibliographical note

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© The Author(s), under exclusive licence to International Society for Microbial Ecology 2021.

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title = "Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi",

abstract = "In the article, we, the authors, reported (1). differential gene expression and (2) RNA editing by five species of wood-decaying basidiomycetes. After publication, we discovered that the RNA editing results are artifactual, because we mapped RNAseq reads only to the assembled reference genome, rather than mapping both RNAseq reads and unassembled genomic DNA reads to the assembled reference genome. For this reason, we retract the article. A technical note describing the source of the artifact has been published in ISME Communications [1]. The gene expression results reported are not affected. All authors have agreed to this retraction.",

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AU - Wu, Baojun

AU - Gaskell, Jill

AU - Zhang, Jiwei

AU - Toapanta, Christina

AU - Ahrendt, Steven

AU - Grigoriev, Igor V.

AU - Blanchette, Robert A.

AU - Schilling, Jonathan S

AU - Master, Emma

AU - Cullen, Daniel

AU - Hibbett, David S.

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N2 - In the article, we, the authors, reported (1). differential gene expression and (2) RNA editing by five species of wood-decaying basidiomycetes. After publication, we discovered that the RNA editing results are artifactual, because we mapped RNAseq reads only to the assembled reference genome, rather than mapping both RNAseq reads and unassembled genomic DNA reads to the assembled reference genome. For this reason, we retract the article. A technical note describing the source of the artifact has been published in ISME Communications [1]. The gene expression results reported are not affected. All authors have agreed to this retraction.

AB - In the article, we, the authors, reported (1). differential gene expression and (2) RNA editing by five species of wood-decaying basidiomycetes. After publication, we discovered that the RNA editing results are artifactual, because we mapped RNAseq reads only to the assembled reference genome, rather than mapping both RNAseq reads and unassembled genomic DNA reads to the assembled reference genome. For this reason, we retract the article. A technical note describing the source of the artifact has been published in ISME Communications [1]. The gene expression results reported are not affected. All authors have agreed to this retraction.

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Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

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