TY - JOUR
T1 - Representing metabolic pathway information
T2 - An object-oriented approach
AU - Elis, Lynda B M
AU - Speedie, Stuart M.
AU - McLeish, Ryan
PY - 1998
Y1 - 1998
N2 - Motivation: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) is a website providing information and dynamic links for microbial metabolic pathways, enzyme reactions, and their substrates and products. The Compound, Organism, Reaction and Enzyme (CORE) object-oriented database management system was developed to contain and serve this information. Results: CORE was developed using Java, and object-oriented programming language, and PSE persistent object classes from Object Design, Inc. CORE dynamically generates descriptive web pages for reactions, compounds and enzymes, and reconstructs ad hoc pathway maps starting from any UM-BBD reaction. Availability: CORE code is available from the authors upon request. CORE is accessible through the UM-BBD at: http://www.labmed.umn.edu/umbbd/index.html.
AB - Motivation: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) is a website providing information and dynamic links for microbial metabolic pathways, enzyme reactions, and their substrates and products. The Compound, Organism, Reaction and Enzyme (CORE) object-oriented database management system was developed to contain and serve this information. Results: CORE was developed using Java, and object-oriented programming language, and PSE persistent object classes from Object Design, Inc. CORE dynamically generates descriptive web pages for reactions, compounds and enzymes, and reconstructs ad hoc pathway maps starting from any UM-BBD reaction. Availability: CORE code is available from the authors upon request. CORE is accessible through the UM-BBD at: http://www.labmed.umn.edu/umbbd/index.html.
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U2 - 10.1093/bioinformatics/14.9.803
DO - 10.1093/bioinformatics/14.9.803
M3 - Article
C2 - 9918950
AN - SCOPUS:0031743885
SN - 1367-4803
VL - 14
SP - 803
EP - 806
JO - Bioinformatics
JF - Bioinformatics
IS - 9
ER -