Representing metabolic pathway information: An object-oriented approach

Lynda B M Elis, Stuart M. Speedie, Ryan McLeish

Research output: Contribution to journalArticlepeer-review

16 Scopus citations

Abstract

Motivation: The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) is a website providing information and dynamic links for microbial metabolic pathways, enzyme reactions, and their substrates and products. The Compound, Organism, Reaction and Enzyme (CORE) object-oriented database management system was developed to contain and serve this information. Results: CORE was developed using Java, and object-oriented programming language, and PSE persistent object classes from Object Design, Inc. CORE dynamically generates descriptive web pages for reactions, compounds and enzymes, and reconstructs ad hoc pathway maps starting from any UM-BBD reaction. Availability: CORE code is available from the authors upon request. CORE is accessible through the UM-BBD at: http://www.labmed.umn.edu/umbbd/index.html.

Original languageEnglish (US)
Pages (from-to)803-806
Number of pages4
JournalBioinformatics
Volume14
Issue number9
DOIs
StatePublished - 1998

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