Rapid detection of powassan virus in a patient with encephalitis by metagenomic sequencing

Anne Piantadosi; Sanjat Kanjilal; Vijay Ganesh; Arjun Khanna; Emily P. Hyle; Jonathan Rosand; Tyler Bold; Hayden C. Metsky; Jacob Lemieux; Michael J. Leone; Lisa Freimark; Christian B. Matranga; Gordon Adams; Graham McGrath; Siavash Zamirpour; Sam Telford; Eric Rosenberg; Tracey Cho; Matthew P. Frosch; Marcia B. Goldberg; Shibani S. Mukerji; Pardis C. Sabeti

doi:10.1093/cid/cix792

Rapid detection of powassan virus in a patient with encephalitis by metagenomic sequencing

Anne Piantadosi, Sanjat Kanjilal, Vijay Ganesh, Arjun Khanna, Emily P. Hyle, Jonathan Rosand, Tyler Bold, Hayden C. Metsky, Jacob Lemieux, Michael J. Leone, Lisa Freimark, Christian B. Matranga, Gordon Adams, Graham McGrath, Siavash Zamirpour, Sam Telford, Eric Rosenberg, Tracey Cho, Matthew P. Frosch, Marcia B. GoldbergShibani S. Mukerji, Pardis C. Sabeti

Medicine - Infectious Disease and International Medicine

Research output: Contribution to journal › Article › peer-review

32 Scopus citations

Abstract

We describe a patient with severe and progressive encephalitis of unknown etiology. We performed rapid metagenomic sequencing from cerebrospinal fluid and identified Powassan virus, an emerging tick-borne flavivirus that has been increasingly detected in the United States.

Original language	English (US)
Pages (from-to)	789-792
Number of pages	4
Journal	Clinical Infectious Diseases
Volume	66
Issue number	5
DOIs	https://doi.org/10.1093/cid/cix792
State	Published - Mar 2018

Bibliographical note

Funding Information:
Potential conflicts of interest. S. T. reports consultation on tick-borne disease diagnostics with Oxford Immunotec, Fuller Laboratories, and Meridian Biosciences. E. R. reports consultation with T2 Biosystems and TBS Technologies. M. F. reports a sponsored research grant from Biogen. All other authors declare no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.

Funding Information:
We would like to thank Asim Ahmed, MD, and Daniel Park, PhD, for valuable comments on the manuscript, and Cormac Kinsella, Simon Ye, Katherine Siddle, PhD, and Andreas Gnirke, PhD, for expert technical advice. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute.

Funding Information:
Financial support. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute.

Publisher Copyright:
© The Author(s) 2017.

Keywords

Encephalitis
Metagenomic sequencing
Powassan virus

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Publisher link

10.1093/cid/cix792

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850433

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Piantadosi, A., Kanjilal, S., Ganesh, V., Khanna, A., Hyle, E. P., Rosand, J., Bold, T., Metsky, H. C., Lemieux, J., Leone, M. J., Freimark, L., Matranga, C. B., Adams, G., McGrath, G., Zamirpour, S., Telford, S., Rosenberg, E., Cho, T., Frosch, M. P., ... Sabeti, P. C. (2018). Rapid detection of powassan virus in a patient with encephalitis by metagenomic sequencing. Clinical Infectious Diseases, 66(5), 789-792. https://doi.org/10.1093/cid/cix792

Piantadosi, A, Kanjilal, S, Ganesh, V, Khanna, A, Hyle, EP, Rosand, J, Bold, T, Metsky, HC, Lemieux, J, Leone, MJ, Freimark, L, Matranga, CB, Adams, G, McGrath, G, Zamirpour, S, Telford, S, Rosenberg, E, Cho, T, Frosch, MP, Goldberg, MB, Mukerji, SS & Sabeti, PC 2018, 'Rapid detection of powassan virus in a patient with encephalitis by metagenomic sequencing', Clinical Infectious Diseases, vol. 66, no. 5, pp. 789-792. https://doi.org/10.1093/cid/cix792

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abstract = "We describe a patient with severe and progressive encephalitis of unknown etiology. We performed rapid metagenomic sequencing from cerebrospinal fluid and identified Powassan virus, an emerging tick-borne flavivirus that has been increasingly detected in the United States.",

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note = "Funding Information: Potential conflicts of interest. S. T. reports consultation on tick-borne disease diagnostics with Oxford Immunotec, Fuller Laboratories, and Meridian Biosciences. E. R. reports consultation with T2 Biosystems and TBS Technologies. M. F. reports a sponsored research grant from Biogen. All other authors declare no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed. Funding Information: We would like to thank Asim Ahmed, MD, and Daniel Park, PhD, for valuable comments on the manuscript, and Cormac Kinsella, Simon Ye, Katherine Siddle, PhD, and Andreas Gnirke, PhD, for expert technical advice. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute. Funding Information: Financial support. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute. Publisher Copyright: {\textcopyright} The Author(s) 2017.",

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AU - Kanjilal, Sanjat

AU - Ganesh, Vijay

AU - Khanna, Arjun

AU - Hyle, Emily P.

AU - Rosand, Jonathan

AU - Bold, Tyler

AU - Metsky, Hayden C.

AU - Lemieux, Jacob

AU - Leone, Michael J.

AU - Freimark, Lisa

AU - Matranga, Christian B.

AU - Adams, Gordon

AU - McGrath, Graham

AU - Zamirpour, Siavash

AU - Telford, Sam

AU - Rosenberg, Eric

AU - Cho, Tracey

AU - Frosch, Matthew P.

AU - Goldberg, Marcia B.

AU - Mukerji, Shibani S.

AU - Sabeti, Pardis C.

N1 - Funding Information: Potential conflicts of interest. S. T. reports consultation on tick-borne disease diagnostics with Oxford Immunotec, Fuller Laboratories, and Meridian Biosciences. E. R. reports consultation with T2 Biosystems and TBS Technologies. M. F. reports a sponsored research grant from Biogen. All other authors declare no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed. Funding Information: We would like to thank Asim Ahmed, MD, and Daniel Park, PhD, for valuable comments on the manuscript, and Cormac Kinsella, Simon Ye, Katherine Siddle, PhD, and Andreas Gnirke, PhD, for expert technical advice. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute. Funding Information: Financial support. This work was supported by the National Institutes of Health (KL2 TR001100 to A. P., T32 AI007061 to S. K., and T32 AG000222 to S. S. M.), a Massachusetts General Hospital Department of Neurology SPARK Award to S. S. M. and T. C., and a generous Broadnext10 gift from the Broad Institute. Publisher Copyright: © The Author(s) 2017.

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Rapid detection of powassan virus in a patient with encephalitis by metagenomic sequencing

Abstract

Bibliographical note

Keywords

UN SDGs

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