Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

Douglas Marthaler; Lindsey Raymond; Yin Jiang; Jim Collins; Stephanie A Rossow; Albert Rovira

doi:10.3201/eid2008.140526

Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

Douglas Marthaler
, Lindsey Raymond
, Yin Jiang
, Jim Collins
, Stephanie A Rossow
, Albert Rovira

Veterinary Population Medicine

Research output: Contribution to journal › Article › peer-review

174 Scopus citations

Abstract

In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%-100% nt similarity to the other US PDCoV strains.

Original language	English (US)
Pages (from-to)	1347-1350
Number of pages	4
Journal	Emerging infectious diseases
Volume	20
Issue number	8
DOIs	https://doi.org/10.3201/eid2008.140526
State	Published - 2014

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10.3201/eid2008.140526

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title = "Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus",

abstract = "In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30\% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99\%-100\% nt similarity to the other US PDCoV strains.",

author = "Douglas Marthaler and Lindsey Raymond and Yin Jiang and Jim Collins and Rossow, \{Stephanie A\} and Albert Rovira",

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publisher = "Centers for Disease Control and Prevention (CDC)",

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T1 - Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

AU - Marthaler, Douglas

AU - Raymond, Lindsey

AU - Jiang, Yin

AU - Collins, Jim

AU - Rossow, Stephanie A

AU - Rovira, Albert

PY - 2014

Y1 - 2014

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AB - In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%-100% nt similarity to the other US PDCoV strains.

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UR - https://www.scopus.com/pages/publications/84905278256#tab=citedBy

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M3 - Article

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AN - SCOPUS:84905278256

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JO - Emerging infectious diseases

JF - Emerging infectious diseases

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ER -

Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

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