Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

Douglas Marthaler; Lindsey Raymond; Yin Jiang; James Collins; Kurt Rossow; Albert Rovira

doi:10.3201/eid2008.140526

Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

Douglas Marthaler, Lindsey Raymond, Yin Jiang, James Collins, Kurt Rossow, Albert Rovira

Veterinary Population Medicine

Research output: Contribution to journal › Article › peer-review

Abstract

In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%-100% nt similarity to the other US PDCoV strains.

Original language	English (US)
Pages (from-to)	1347-1350
Number of pages	4
Journal	Emerging Infectious Diseases
Volume	20
Issue number	8
DOIs	https://doi.org/10.3201/eid2008.140526
State	Published - Aug 1 2014

Keywords

phylogenetic analysis
Porcine deltacoronavirus
rRT-PCR
United States
viruses

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10.3201/eid2008.140526

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abstract = "In February 2014, porcine deltacoronavirus (PDCoV) was identified in the United States. We developed a PDCoV real-time reverse transcription PCR that identified PDCoV in 30% of samples tested. Four additional PDCoV genomes from the United States were sequenced; these had ≈99%-100% nt similarity to the other US PDCoV strains. ",

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AU - Raymond, Lindsey

AU - Jiang, Yin

AU - Collins, James

AU - Rossow, Kurt

AU - Rovira, Albert

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KW - rRT-PCR

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KW - viruses

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ER -

Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus

Abstract

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