Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: Implications for HIV-1 restriction

Eric W. Refsland, Mark D. Stenglein, Keisuke Shindo, John S. Albin, William L. Brown, Reuben S. Harris

Research output: Contribution to journalArticlepeer-review

292 Scopus citations


The human APOBEC3 proteins are DNA cytidine deaminases that impede the replication of many different transposons and viruses. The genes that encode APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G and APOBEC3H were generated through relatively recent recombination events. The resulting high degree of inter-relatedness has complicated the development of specific quantitative PCR assays for these genes despite considerable interest in understanding their expression profiles. Here, we describe a set of quantitative PCR assays that specifically measures the mRNA levels of each APOBEC3 gene. The specificity and sensitivity of each assay was validated using a full matrix of APOBEC3 cDNA templates. The assays were used to quantify the APOBEC3 repertoire in multiple human T-cell lines, bulk leukocytes and leukocyte subsets, and 20 different human tissues. The data demonstrate that multiple APOBEC3 genes are expressed constitutively in most types of cells and tissues, and that distinct APOBEC3 genes are induced upon T-cell activation and interferon treatment. These data help define the APOBEC3 repertoire relevant to HIV-1 restriction in T cells, and they suggest a general model in which multiple APOBEC3 proteins function together to provide a constitutive barrier to foreign genetic elements, which can be fortified by transcriptional induction.

Original languageEnglish (US)
Article numbergkq174
Pages (from-to)4274-4284
Number of pages11
JournalNucleic acids research
Issue number13
StatePublished - Mar 20 2010

Bibliographical note

Funding Information:
National Institutes of Health (grants GM090437 and AI064046); Bill and Melinda Gates Foundation; Children’s Cancer Research Fund (Minneapolis, MN) 3M Graduate Fellowship and a Cancer Biology Training Grant (CA009138) to M.D.S. Funding for open access charge: National Institutes of Health.


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