Qualitative and quantitative evaluation of six algorithms for correcting intensity nonuniformity effects

James B. Arnold, Jeih San Liow, Kirt A. Schaper, Joshua J. Stern, John G. Sled, David W. Shattuck, Andrew J. Worth, Mark S. Cohen, Richard M. Leahy, John C. Mazziotta, David A. Rottenberg

Research output: Contribution to journalArticlepeer-review

138 Scopus citations

Abstract

The desire to correct intensity nonuniformity in magnetic resonance images has led to the proliferation of nonuniformity-correction (NUC) algorithms with different theoretical underpinnings. In order to provide end users with a rational basis for selecting a given algorithm for a specific neuroscientific application, we evaluated the performance of six NUC algorithms. We used simulated and real MRI data volumes, including six repeat scans of the same subject, in order to rank the accuracy, precision, and stability of the nonuniformity corrections. We also compared algorithms using data volumes from different subjects and different (1.5T and 3.0T) MRI scanners in order to relate differences in algorithmic performance to inter-subject variability and/or differences in scanner performance. In phantom studies, the correlation of the extracted with the applied nonuniformity was highest in the transaxial (left-to-right) direction and lowest in the axial (top-to-bottom) direction. Two of the six algorithms demonstrated a high degree of stability, as measured by the iterative application of the algorithm to its corrected output. While none of the algorithms performed ideally under all circumstances, locally adaptive methods generally outperformed nonadaptive methods.

Original languageEnglish (US)
Pages (from-to)931-943
Number of pages13
JournalNeuroImage
Volume13
Issue number5
DOIs
StatePublished - Jan 1 2001

Bibliographical note

Funding Information:
This study was supported by NIH Grants NS33718, MH57180, and MH52176.

Keywords

  • Magnetic field inhomogeneity
  • MRI
  • Tissue segmentation

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