Prevalence of season-specific Escherichia coli strains in the Yeongsan River Basin of South Korea

Jeonghwan Jang, Tatsuya Unno, Seung Won Lee, Kyung Hwa Cho, Michael J. Sadowsky, Gwangpyo Ko, Joon Ha Kim, Hor Gil Hur

Research output: Contribution to journalArticlepeer-review

11 Scopus citations

Abstract

Seasonal and spatial variation in the genotypic richness of 3480 Escherichia coli isolates obtained from the Yeongsan River basin in South Korea was investigated by using the horizontal fluorophore-enhanced rep-PCR (HFERP) DNA fingerprinting technique. The relationship between 60 E. coli isolates from each of 58 freshwater samples was determined by using multidimensional scaling (MDS) analysis and self-organized maps (SOMs). The MDS analysis, done based on HFERP DNA fingerprints, showed that E. coli isolates obtained in October through December clustered tightly, while those obtained in other sampling periods were more genetically diverse. However, site-specific E. coli genotypes were not observed. SOMs analysis, done using the 10 most frequently isolated E. coli genotypes, showed the occurrence of season-specific E. coli genotypes and the main SOMs clusters were most influenced by temperature, strain diversity and biochemical oxygen demand. Diversity among E. coli genotypes tended to decrease as water temperature decreased, and the numbers of E. coli genotypes observed in urban area were greater, more diverse and less dependent on water temperature than those obtained from agricultural areas. Taken together, our findings indicate that that an ecological approach needs to be considered in order to obtain a better understanding of E. coli community dynamics in the environment and that SOMs analysis is useful to visualize the multidimensional dependent variables that are influencing the types and dynamics of specific E. coli genotypes in the environment.

Original languageEnglish (US)
Pages (from-to)3103-3113
Number of pages11
JournalEnvironmental microbiology
Volume13
Issue number12
DOIs
StatePublished - Dec 1 2011

Fingerprint Dive into the research topics of 'Prevalence of season-specific Escherichia coli strains in the Yeongsan River Basin of South Korea'. Together they form a unique fingerprint.

Cite this