Polymorphisms in the base excision repair pathway and graft-versus-host disease

M. Arora, B. Lindgren, S. Basu, S. Nagaraj, M. Gross, D. Weisdorf, B. Thyagarajan

Research output: Contribution to journalArticlepeer-review

15 Scopus citations

Abstract

Graft-versus-host disease (GVHD) is a frequent complication after hematopoietic cell transplant (HCT). Tissue damage as a result of chemoradiation injury is the initiating event in the pathogenesis of acute GVHD. Variations in DNA repair can influence the amount of tissue damage in response to alkylating agents and ionizing radiation used as conditioning during HCT. As DNA damage caused by these agents is repaired by the base excision repair (BER) pathway, we hypothesized that single-nucleotide polymorphisms (SNPs) in BER pathway will be associated with GVHD after HCT. Hence, we analyzed 179 SNPs in BER pathway in 470 recipients of allogeneic HCT for association with acute and chronic GVHD. In multivariate analysis, one SNP (rs6844176) in RFC1 (replication factor C (activator 1)) gene was independently associated with a higher risk of grade II-IV acute GVHD (relative risk (RR): 1.39, 95% confidence interval (CI): 1.14-1.70, P0.001), and showed a trend toward higher risk of grade III-IV acute GVHD (RR: 1.33, 95% CI: 0.95-1.85, P0.09). One SNP in PARP1 gene (rs1805410) was associated with a higher risk of chronic GVHD (RR: 1.81, 95% CI: 1.29-2.54, P0.001). These results show that SNPs in the BER pathway can be used as genetic biomarkers to predict those at high risk for GVHD toward whom novel prophylactic strategies could be targeted.

Original languageEnglish (US)
Pages (from-to)1470-1475
Number of pages6
JournalLeukemia
Volume24
Issue number8
DOIs
StatePublished - Aug 2010

Bibliographical note

Funding Information:
Dr Mukta Arora has received funding from the Leukemia Research Fund, University of Minnesota; and from NIAID for this project. Dr Bharat Thyagarajan has received funding from NIAID; the other co-authors declare no conflict of interest.

Funding Information:
This work was supported by NIAID (R21 AI079354-01) and the Leukemia Research Fund, University of Minnesota.

Keywords

  • BER
  • DNA repair
  • GVHD
  • SNP
  • polymorphism

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