TY - JOUR
T1 - Phase behavior of a lattice hydrophobic oligomer in explicit water
AU - Romero-Vargas Castrillón, Santiago
AU - Matysiak, Silvina
AU - Stillinger, Frank H.
AU - Rossky, Peter J.
AU - Debenedetti, Pablo G.
PY - 2012/8/9
Y1 - 2012/8/9
N2 - We investigate the thermodynamics of hydrophobic oligomer collapse using a water-explicit, three-dimensional lattice model. The model captures several aspects of protein thermodynamics, including the emergence of cold- and thermal-unfolding, as well as unfolding at high solvent density (a phenomenon akin to pressure-induced denaturation). We show that over a range of conditions spanning a ≈14% increase in solvent density, the oligomer transforms into a compact, strongly water-penetrated conformation at low temperature. This contrasts with thermal unfolding at high temperature, where the system "denatures" into an extended random coil conformation. We report a phase diagram for hydrophobic collapse that correctly captures qualitative aspects of cold and thermal unfolding at low to intermediate solvent densities.
AB - We investigate the thermodynamics of hydrophobic oligomer collapse using a water-explicit, three-dimensional lattice model. The model captures several aspects of protein thermodynamics, including the emergence of cold- and thermal-unfolding, as well as unfolding at high solvent density (a phenomenon akin to pressure-induced denaturation). We show that over a range of conditions spanning a ≈14% increase in solvent density, the oligomer transforms into a compact, strongly water-penetrated conformation at low temperature. This contrasts with thermal unfolding at high temperature, where the system "denatures" into an extended random coil conformation. We report a phase diagram for hydrophobic collapse that correctly captures qualitative aspects of cold and thermal unfolding at low to intermediate solvent densities.
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U2 - 10.1021/jp3039237
DO - 10.1021/jp3039237
M3 - Article
C2 - 22823886
AN - SCOPUS:84864910207
SN - 1520-6106
VL - 116
SP - 9540
EP - 9548
JO - Journal of Physical Chemistry B
JF - Journal of Physical Chemistry B
IS - 31
ER -