PENCODE: A plant encyclopedia of DNA elements

Amanda K. Lane, Chad E. Niederhuth, Lexiang Ji, Robert J. Schmitz

Research output: Contribution to journalArticlepeer-review

27 Scopus citations

Abstract

ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE.

Original languageEnglish (US)
Pages (from-to)49-70
Number of pages22
JournalAnnual Review of Genetics
Volume48
DOIs
StatePublished - Nov 23 2014
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2014 by Annual Reviews. All rights reserved.

Keywords

  • DNA elements
  • comparative epigenomics
  • epigenetics

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