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Parallel pairwise operations on data stored in DNA: sorting, XOR, shifting, and searching

Research output: Contribution to journalArticlepeer-review

Abstract

Prior research has introduced the Single-Instruction-Multiple-Data paradigm for DNA computing (SIMD DNA). It offers the potential for storing information and performing in-memory computations on DNA, with massive parallelism. This paper introduces three new SIMD DNA operations: sorting, shifting, and searching. Each is a fundamental operation in computer science. Our implementations demonstrate the effectiveness of parallel pairwise operations with this new paradigm.

Original languageEnglish (US)
Pages (from-to)455-476
Number of pages22
JournalNatural Computing
Volume23
Issue number3
DOIs
StatePublished - Sep 2024

Bibliographical note

Publisher Copyright:
© The Author(s), under exclusive licence to Springer Nature B.V. 2023.

Keywords

  • DNA computing
  • DNA storage
  • Molecular computing
  • Parallel computing
  • Strand displacement

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