Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

Julien Cohen-Adad; Eva Alonso-Ortiz; Mihael Abramovic; Carina Arneitz; Nicole Atcheson; Laura Barlow; Robert L. Barry; Markus Barth; Marco Battiston; Christian Büchel; Matthew Budde; Virginie Callot; Anna J.E. Combes; Benjamin De Leener; Maxime Descoteaux; Paulo Loureiro de Sousa; Marek Dostál; Julien Doyon; Adam Dvorak; Falk Eippert; Karla R. Epperson; Kevin S. Epperson; Patrick Freund; Jürgen Finsterbusch; Alexandru Foias; Michela Fratini; Issei Fukunaga; Claudia A.M. Gandini Wheeler-Kingshott; Giancarlo Germani; Guillaume Gilbert; Federico Giove; Charley Gros; Francesco Grussu; Akifumi Hagiwara; Pierre Gilles Henry; Tomáš Horák; Masaaki Hori; James Joers; Kouhei Kamiya; Haleh Karbasforoushan; Miloš Keřkovský; Ali Khatibi; Joo Won Kim; Nawal Kinany; Hagen H. Kitzler; René Labounek; Christophe Lenglet; Igor Nestrasil; Y. Suzuki; Junqian Xu

doi:10.1038/s41597-021-00941-8

Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

Julien Cohen-Adad, Eva Alonso-Ortiz, Mihael Abramovic, Carina Arneitz, Nicole Atcheson, Laura Barlow, Robert L. Barry, Markus Barth, Marco Battiston, Christian Büchel, Matthew Budde, Virginie Callot, Anna J.E. Combes, Benjamin De Leener, Maxime Descoteaux, Paulo Loureiro de Sousa, Marek Dostál, Julien Doyon, Adam Dvorak, Falk EippertKarla R. Epperson, Kevin S. Epperson, Patrick Freund, Jürgen Finsterbusch, Alexandru Foias, Michela Fratini, Issei Fukunaga, Claudia A.M. Gandini Wheeler-Kingshott, Giancarlo Germani, Guillaume Gilbert, Federico Giove, Charley Gros, Francesco Grussu, Akifumi Hagiwara, Pierre Gilles Henry, Tomáš Horák, Masaaki Hori, James Joers, Kouhei Kamiya, Haleh Karbasforoushan, Miloš Keřkovský, Ali Khatibi, Joo Won Kim, Nawal Kinany, Hagen H. Kitzler, René Labounek, Christophe Lenglet, Igor Nestrasil, Y. Suzuki, Junqian Xu

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Abstract

In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.

Original language	English (US)
Article number	219
Journal	Scientific Data
Volume	8
Issue number	1
DOIs	https://doi.org/10.1038/s41597-021-00941-8
State	Published - Aug 16 2021

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Cohen-Adad, J., Alonso-Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R. L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A. J. E., De Leener, B., Descoteaux, M., de Sousa, P. L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data, 8(1), Article 219. https://doi.org/10.1038/s41597-021-00941-8

Cohen-Adad, J, Alonso-Ortiz, E, Abramovic, M, Arneitz, C, Atcheson, N, Barlow, L, Barry, RL, Barth, M, Battiston, M, Büchel, C, Budde, M, Callot, V, Combes, AJE, De Leener, B, Descoteaux, M, de Sousa, PL, Dostál, M, Doyon, J, Dvorak, A, Eippert, F, Epperson, KR, Epperson, KS, Freund, P, Finsterbusch, J, Foias, A, Fratini, M, Fukunaga, I, Gandini Wheeler-Kingshott, CAM, Germani, G, Gilbert, G, Giove, F, Gros, C, Grussu, F, Hagiwara, A, Henry, PG, Horák, T, Hori, M, Joers, J, Kamiya, K, Karbasforoushan, H, Keřkovský, M, Khatibi, A, Kim, JW, Kinany, N, Kitzler, HH, Labounek, R , Lenglet, C , Nestrasil, I, Suzuki, Y & Xu, J 2021, 'Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers', Scientific Data, vol. 8, no. 1, 219. https://doi.org/10.1038/s41597-021-00941-8

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AU - Barlow, Laura

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AU - Epperson, Kevin S.

AU - Freund, Patrick

AU - Finsterbusch, Jürgen

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AU - Fratini, Michela

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AU - Gandini Wheeler-Kingshott, Claudia A.M.

AU - Germani, Giancarlo

AU - Gilbert, Guillaume

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AU - Kinany, Nawal

AU - Kitzler, Hagen H.

AU - Labounek, René

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AU - Nestrasil, Igor

AU - Suzuki, Y.

AU - Xu, Junqian

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Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

Abstract

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