On the Characterization of DNA Primary Sequences by Triplet of Nucleic Acid Bases

Milan Randić; Xiaofeng Guo; Subhash C Basak

doi:10.1021/ci000120q

On the Characterization of DNA Primary Sequences by Triplet of Nucleic Acid Bases

Milan Randić, Xiaofeng Guo, Subhash C Basak

Natural Resources Research Institute

Research output: Contribution to journal › Article › peer-review

121 Scopus citations

Abstract

We consider construction of a set of smaller 4 × 4 matrices to represent DNA primary sequences which are based on enumeration of all 64 triplets of nucleic acids bases. The leading eigenvalue from the constructed matrices has been selected as an invariant for construction of a vector to characterize DNA. Additional invariants considered of the derived condensed matrices of DNA include a 64-component vector, the components of which consist of ordered triplets XYZ, with X, Y, Z = A, C, G, T. Construction of similarity/ dissimilarity tables based on different invariants for a set of sequences of DNA belonging to the first exon of the β-globin gene of eight species illustrates the utility of newly formulated invariants for DNA.

Original language	English (US)
Pages (from-to)	619-626
Number of pages	8
Journal	Journal of chemical information and computer sciences
Volume	41
Issue number	3
DOIs	https://doi.org/10.1021/ci000120q
State	Published - Dec 1 2001

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abstract = "We consider construction of a set of smaller 4 × 4 matrices to represent DNA primary sequences which are based on enumeration of all 64 triplets of nucleic acids bases. The leading eigenvalue from the constructed matrices has been selected as an invariant for construction of a vector to characterize DNA. Additional invariants considered of the derived condensed matrices of DNA include a 64-component vector, the components of which consist of ordered triplets XYZ, with X, Y, Z = A, C, G, T. Construction of similarity/ dissimilarity tables based on different invariants for a set of sequences of DNA belonging to the first exon of the β-globin gene of eight species illustrates the utility of newly formulated invariants for DNA.",

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