TY - JOUR
T1 - Novel visualization method for biological sequence similarity reports
AU - Chi, Ed H.
AU - Riedl, John T.
AU - Shoop, Elizabeth
AU - Barry, Phillip
PY - 2000/10
Y1 - 2000/10
N2 - Previously, we presented a system called Alignment Viewer that uses information visualization techniques to visualize similarities between a single DNA sequence and a large database of other sequences [Chi et al., IEEE Visualization '95, pp. 44-51, IEEE CS (1995); Chi et al., IEEE Visualization '96, pp. 133-140 and 477, IEEE CS (1996)]. In this paper, we extend, summarize, and describe the system using several interesting case studies. We present our comb glyph technique for visualizing alignments between sequences. In this paper, we also extend the original system by incorporating computational steering, and the visualization of differences between data sets. The case studies and the new extended system present our approach of extracting significant relationships in the biological data set.
AB - Previously, we presented a system called Alignment Viewer that uses information visualization techniques to visualize similarities between a single DNA sequence and a large database of other sequences [Chi et al., IEEE Visualization '95, pp. 44-51, IEEE CS (1995); Chi et al., IEEE Visualization '96, pp. 133-140 and 477, IEEE CS (1996)]. In this paper, we extend, summarize, and describe the system using several interesting case studies. We present our comb glyph technique for visualizing alignments between sequences. In this paper, we also extend the original system by incorporating computational steering, and the visualization of differences between data sets. The case studies and the new extended system present our approach of extracting significant relationships in the biological data set.
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U2 - 10.1117/1.1289351
DO - 10.1117/1.1289351
M3 - Article
AN - SCOPUS:0346444704
SN - 1017-9909
VL - 9
SP - 394
EP - 403
JO - Journal of Electronic Imaging
JF - Journal of Electronic Imaging
IS - 4
ER -