Neurophotonic tools for microscopic measurements and manipulation: status report

Ahmed S. Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A. Boas; Erin M. Buckley; Robert E. Campbell; Anderson I. Chen; Xiaojun Cheng; Tom Ci m r; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R. Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Tomas Fernandez-Alfonso; Christopher G.L. Ferri; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M.C. Hillman; Ute Hochgeschwender; Matthew G. Holt; Na Ji; Klvllclm Klllç; Evelyn M.R. Lake; Lei Li; Tianqi Li; Philipp MäcHler; Evan W. Miller; Rickson C. Mesquita; K. M.Naga Srinivas Nadella; U. Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S. Pavone; Citlali Perez Campos; Darcy S. Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L. Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N. Shroff; R. Angus Silver; Ruth R. Sims; Spencer L. Smith; Vivek J. Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A. Vinogradov; Flavia Vitale; Lihong V. Wang; Hana Uhlírová; Chris Xu; Changhuei Yang; Mu Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao

doi:10.1117/1.NPh.9.S1.013001

Neurophotonic tools for microscopic measurements and manipulation: status report

Ahmed S. Abdelfattah, Sapna Ahuja, Taner Akkin, Srinivasa Rao Allu, Joshua Brake, David A. Boas, Erin M. Buckley, Robert E. Campbell, Anderson I. Chen, Xiaojun Cheng, Tom Ci m r, Irene Costantini, Massimo De Vittorio, Anna Devor, Patrick R. Doran, Mirna El Khatib, Valentina Emiliani, Natalie Fomin-Thunemann, Yeshaiahu Fainman, Tomas Fernandez-AlfonsoChristopher G.L. Ferri, Ariel Gilad, Xue Han, Andrew Harris, Elizabeth M.C. Hillman, Ute Hochgeschwender, Matthew G. Holt, Na Ji, Klvllclm Klllç, Evelyn M.R. Lake, Lei Li, Tianqi Li, Philipp MäcHler, Evan W. Miller, Rickson C. Mesquita, K. M.Naga Srinivas Nadella, U. Valentin Nägerl, Yusuke Nasu, Axel Nimmerjahn, Petra Ondráčková, Francesco S. Pavone, Citlali Perez Campos, Darcy S. Peterka, Filippo Pisano, Ferruccio Pisanello, Francesca Puppo, Bernardo L. Sabatini, Sanaz Sadegh, Sava Sakadzic, Shy Shoham, Sanaya N. Shroff, R. Angus Silver, Ruth R. Sims, Spencer L. Smith, Vivek J. Srinivasan, Martin Thunemann, Lei Tian, Lin Tian, Thomas Troxler, Antoine Valera, Alipasha Vaziri, Sergei A. Vinogradov, Flavia Vitale, Lihong V. Wang, Hana Uhlírová, Chris Xu, Changhuei Yang, Mu Han Yang, Gary Yellen, Ofer Yizhar, Yongxin Zhao

Research output: Contribution to journal › Article › peer-review

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Abstract

Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics' agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.

Original language	English (US)
Pages (from-to)	13001
Number of pages	1
Journal	Neurophotonics
Volume	9
Issue number	S1
DOIs	https://doi.org/10.1117/1.NPh.9.S1.013001
State	Published - Jan 1 2022

Bibliographical note

Publisher Copyright:
© The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.

Keywords

blood flow
fluorescence
label free
molecular sensors
multimodal
optical imaging
optogenetics

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10.1117/1.NPh.9.S1.013001

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Abdelfattah, A. S., Ahuja, S., Akkin, T., Allu, S. R., Brake, J., Boas, D. A., Buckley, E. M., Campbell, R. E., Chen, A. I., Cheng, X., Ci m r, T., Costantini, I., De Vittorio, M., Devor, A., Doran, P. R., El Khatib, M., Emiliani, V., Fomin-Thunemann, N., Fainman, Y., ... Zhao, Y. (2022). Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics, 9(S1), 13001. https://doi.org/10.1117/1.NPh.9.S1.013001

Abdelfattah, AS, Ahuja, S, Akkin, T, Allu, SR, Brake, J, Boas, DA, Buckley, EM, Campbell, RE, Chen, AI, Cheng, X, Ci m r, T, Costantini, I, De Vittorio, M, Devor, A, Doran, PR, El Khatib, M, Emiliani, V, Fomin-Thunemann, N, Fainman, Y, Fernandez-Alfonso, T, Ferri, CGL, Gilad, A, Han, X, Harris, A, Hillman, EMC, Hochgeschwender, U, Holt, MG, Ji, N, Klllç, K, Lake, EMR, Li, L, Li, T, MäcHler, P, Miller, EW, Mesquita, RC, Nadella, KMNS, Nägerl, UV, Nasu, Y, Nimmerjahn, A, Ondráčková, P, Pavone, FS, Perez Campos, C, Peterka, DS, Pisano, F, Pisanello, F, Puppo, F, Sabatini, BL, Sadegh, S, Sakadzic, S, Shoham, S, Shroff, SN, Silver, RA, Sims, RR, Smith, SL, Srinivasan, VJ, Thunemann, M, Tian, L, Tian, L, Troxler, T, Valera, A, Vaziri, A, Vinogradov, SA, Vitale, F, Wang, LV, Uhlírová, H, Xu, C, Yang, C, Yang, MH, Yellen, G, Yizhar, O & Zhao, Y 2022, 'Neurophotonic tools for microscopic measurements and manipulation: status report', Neurophotonics, vol. 9, no. S1, pp. 13001. https://doi.org/10.1117/1.NPh.9.S1.013001

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title = "Neurophotonic tools for microscopic measurements and manipulation: status report",

abstract = "Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics' agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.",

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note = "Publisher Copyright: {\textcopyright} The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.",

year = "2022",

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AU - Abdelfattah, Ahmed S.

AU - Ahuja, Sapna

AU - Akkin, Taner

AU - Allu, Srinivasa Rao

AU - Brake, Joshua

AU - Boas, David A.

AU - Buckley, Erin M.

AU - Campbell, Robert E.

AU - Chen, Anderson I.

AU - Cheng, Xiaojun

AU - Ci m r, Tom

AU - Costantini, Irene

AU - De Vittorio, Massimo

AU - Devor, Anna

AU - Doran, Patrick R.

AU - El Khatib, Mirna

AU - Emiliani, Valentina

AU - Fomin-Thunemann, Natalie

AU - Fainman, Yeshaiahu

AU - Fernandez-Alfonso, Tomas

AU - Ferri, Christopher G.L.

AU - Gilad, Ariel

AU - Han, Xue

AU - Harris, Andrew

AU - Hillman, Elizabeth M.C.

AU - Hochgeschwender, Ute

AU - Holt, Matthew G.

AU - Ji, Na

AU - Klllç, Klvllclm

AU - Lake, Evelyn M.R.

AU - Li, Lei

AU - Li, Tianqi

AU - MäcHler, Philipp

AU - Miller, Evan W.

AU - Mesquita, Rickson C.

AU - Nadella, K. M.Naga Srinivas

AU - Nägerl, U. Valentin

AU - Nasu, Yusuke

AU - Nimmerjahn, Axel

AU - Ondráčková, Petra

AU - Pavone, Francesco S.

AU - Perez Campos, Citlali

AU - Peterka, Darcy S.

AU - Pisano, Filippo

AU - Pisanello, Ferruccio

AU - Puppo, Francesca

AU - Sabatini, Bernardo L.

AU - Sadegh, Sanaz

AU - Sakadzic, Sava

AU - Shoham, Shy

AU - Shroff, Sanaya N.

AU - Silver, R. Angus

AU - Sims, Ruth R.

AU - Smith, Spencer L.

AU - Srinivasan, Vivek J.

AU - Thunemann, Martin

AU - Tian, Lei

AU - Tian, Lin

AU - Troxler, Thomas

AU - Valera, Antoine

AU - Vaziri, Alipasha

AU - Vinogradov, Sergei A.

AU - Vitale, Flavia

AU - Wang, Lihong V.

AU - Uhlírová, Hana

AU - Xu, Chris

AU - Yang, Changhuei

AU - Yang, Mu Han

AU - Yellen, Gary

AU - Yizhar, Ofer

AU - Zhao, Yongxin

N1 - Publisher Copyright: © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.

PY - 2022/1/1

Y1 - 2022/1/1

N2 - Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics' agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.

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KW - fluorescence

KW - label free

KW - molecular sensors

KW - multimodal

KW - optical imaging

KW - optogenetics

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JO - Neurophotonics

JF - Neurophotonics

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ER -

Neurophotonic tools for microscopic measurements and manipulation: status report

Abstract

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Keywords

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