Modeling DNA electrophoresis in microfluidic entropic trapping devices

Kevin D. Dorfman, Howard Brenner

Research output: Contribution to journalArticle

4 Scopus citations


Entropic trapping constitutes a novel scheme for separating various length strands of DNA using microfluidic chips etched to periodically varying depths. Deep portions of the chip, acting as entropic traps in a chain-length dependent manner, hinder DNA solute transport occurring under the influence of an externally-applied electric field. Together with knowledge of the average solute holdup time and device connectivity, as well as a lumped-parameter trap-scale (local) DNA transport model, generalized Taylor-Aris dispersion (macrotransport) theory for spatially periodic networks is employed to derive analytical expressions for a trio of chip-scale (global) transport process parameters, namely the solute dispersivity, number of theoretical plates, and separatin resolution. These expresions are shown to furnish results that accord, at least qualitatively, with both experimental trends and data reported in the literature. In conjunction with simple macroscale experiments suggested by the theory, this coarse-grained model furnishes a paradigm for exploring the microscale phenomenon of entropic trapping in the context of the rational design of such devices.

Original languageEnglish (US)
Pages (from-to)237-244
Number of pages8
JournalBiomedical Microdevices
Issue number3
StatePublished - Aug 8 2002


  • Chrometography
  • Lab-on-a-chip
  • Microfluidics
  • Taylor dispersion

Fingerprint Dive into the research topics of 'Modeling DNA electrophoresis in microfluidic entropic trapping devices'. Together they form a unique fingerprint.

  • Cite this