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Metaproteomic analysis using the Galaxy framework
Pratik D. Jagtap
, Alan Blakely
, Kevin Murray
, Shaun Stewart
, Joel Kooren
,
James E. Johnson
,
Nelson L. Rhodus
, Joel Rudney
,
Timothy J. Griffin
Metabolic and Systems Biology (TMED)
Center for Metabolomics and Proteomics
Research Computing
Oral Medicine and Diagnosis
Basic Sciences
Minnesota Supercomputing Institute
Genetics Mechanisms of Cancer
Screening, Prevention, Etiology & Cancer Survivorship
Research output
:
Contribution to journal
›
Article
›
peer-review
75
Scopus citations
Overview
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Keyphrases
Galaxies
100%
Metaproteomic Analysis
100%
Metatranscriptomics
100%
Galaxy Framework
100%
Processing Stages
50%
Proteomics
25%
Oral Tissues
25%
Microbiome
25%
Bioinformatics
25%
Functional Characterization
25%
Reduction Method
25%
Exudates
25%
Data Quality
25%
Environmental Samples
25%
Host Cell Proteins
25%
Peptide Sequencing
25%
Sequence Database
25%
Protein Database
25%
MS Data
25%
Molecular Function
25%
Sequence Match
25%
Host Organisms
25%
Comprehensive Identification
25%
Large Proteins
25%
Matching Quality
25%
Automated Processing
25%
Non-host
25%
Tool Analysis
25%
Microorganism Community
25%
Basic Local Alignment Search Tool (BLAST)
25%
Tool Evaluation
25%
ProteomeXchange
25%
Unipept
25%
Taxonomic Characterization
25%
Large Sequences
25%
Metaproteomics Data Analysis
25%
Biochemistry, Genetics and Molecular Biology
Solution and Solubility
100%
Peptide Sequence
100%
Microorganism
100%
DNA Template
100%
Sequence Database
100%
Protein Database
100%
Microbiome
100%
Proteomics
100%
Bioinformatics
100%