Mapping of specialized metabolite terms onto a plant phylogeny using text mining and large language models

Keyphrases

• Text Mining 100%
• Plant Phylogeny 100%
• Specialized Metabolites 100%
• Plant Chemical Diversity 100%
• Large Language Models 100%
• Community Resources 50%
• Lineage-specific 50%
• Dopamine 50%
• Natural Products 50%
• Tyrosine 50%
• System Level 50%
• Molecular Phylogeny 50%
• Plant Genome 50%
• Plant Natural Products 50%
• Recent Advances 50%
• Well-defined 50%
• Caryophyllales 50%
• Language Model 50%
• False Positive Rate 50%
• Phylogenetic Distribution 50%
• Staggering 50%
• Plant Kingdom 50%
• False Negative Rate 50%
• Specific Compounds 50%
• Compound Classes 50%
• Chemical Species 50%
• Manual Inspection 50%
• Plant Chemicals 50%
• Views of Nature 50%
• Class Distribution 50%
• Species Association 50%
• Fabales 50%
• Betalain pigments 50%
• Post-mining 50%
• Plant Tree of Life 50%
• Liliales 50%
• Transcriptome Sequencing 50%
• Evolutionary Events 50%
• Truth Set 50%
• Amaryllidaceae Alkaloids 50%
• Model-based Signal Processing 50%

Immunology and Microbiology

• Metabolite 100%
• Cladistics 100%
• Lineages 66%
• RNA Sequencing 33%
• Evolution 33%
• Phylogeny 33%
• Plant Genome 33%
• Tree of Life 33%
• Molecular Phylogeny 33%
• Caryophyllales 33%
• Fabales 33%
• Amaryllidaceae 33%
• Liliales 33%
• Betalain 33%

Biochemistry, Genetics and Molecular Biology

• Metabolite 100%
• Cladistics 100%
• Tyrosine 33%
• RNA Sequencing 33%
• Caryophyllales 33%
• Evolution 33%
• Plant Genome 33%
• Phylogeny 33%
• Molecular Phylogeny 33%
• Tree of Life 33%
• Betalain 33%
• Photosynthetic Pigment 33%
• Amaryllidaceae 33%
• Fabales 33%
• Liliales 33%