Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification

Yi Gu; Alex Ce Zhang; Yuanyuan Han; Jie Li; Clark C Chen; Yu Hwa Lo

doi:10.1002/cyto.a.23764

Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification

Yi Gu, Alex Ce Zhang, Yuanyuan Han, Jie Li, Clark C Chen, Yu Hwa Lo

Neurosurgery

Research output: Contribution to journal › Article › peer-review

22 Scopus citations

Abstract

Cell classification based on phenotypical, spatial, and genetic information greatly advances our understanding of the physiology and pathology of biological systems. Technologies derived from next generation sequencing and fluorescent activated cell sorting are cornerstones for cell- and genomic-based assays supporting cell classification and mapping. However, there exists a deficiency in technology space to rapidly isolate cells based on high content image information. Fluorescence-activated cell sorting can only resolve cell-to-cell variation in fluorescence and optical scattering. Utilizing microfluidics, photonics, computation microscopy, real-time image processing and machine learning, we demonstrate an image-guided cell sorting and classification system possessing the high throughput of flow cytometer and high information content of microscopy. We demonstrate the utility of this technology in cell sorting based on (1) nuclear localization of glucocorticoid receptors, (2) particle binding to the cell membrane, and (3) DNA damage induced γ-H2AX foci.

Original language	English (US)
Pages (from-to)	499-509
Number of pages	11
Journal	Cytometry Part A
Volume	95
Issue number	5
DOIs	https://doi.org/10.1002/cyto.a.23764
State	Published - May 2019

Bibliographical note

Funding Information:
Grant sponsor: National Institutes of Health, Grant numberR44DA042636; Grant sponsor: National Science Foun dation, Grant numberECCS-1542148 Additional Supporting Information may be found in the online version of this article.

Funding Information:
This work was performed in part at the San Diego Nanotechnology Infrastructure (SDNI) of UCSD, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (Grant ECCS-1542148). Research reported in this publication was supported by the National Institutes of Health under award number R44DA042636. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Yuhwa Lo has an equity interest in NanoCellect Biomedical as a co-founder and a member of the company’s Scientific Advisory Board. NanoCellect may potentially benefit from the results of this research.

Publisher Copyright:
© 2019 International Society for Advancement of Cytometry

Keywords

image guided cell sorting
imaging flow cytometry
machine learning
microfluidic

Access

10.1002/cyto.a.23764

Fingerprint Dive into the research topics of 'Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification'. Together they form a unique fingerprint.

Cite this

@article{7424bc0587ac42acbc1f8ff59ce9c353,

title = "Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification",

abstract = "Cell classification based on phenotypical, spatial, and genetic information greatly advances our understanding of the physiology and pathology of biological systems. Technologies derived from next generation sequencing and fluorescent activated cell sorting are cornerstones for cell- and genomic-based assays supporting cell classification and mapping. However, there exists a deficiency in technology space to rapidly isolate cells based on high content image information. Fluorescence-activated cell sorting can only resolve cell-to-cell variation in fluorescence and optical scattering. Utilizing microfluidics, photonics, computation microscopy, real-time image processing and machine learning, we demonstrate an image-guided cell sorting and classification system possessing the high throughput of flow cytometer and high information content of microscopy. We demonstrate the utility of this technology in cell sorting based on (1) nuclear localization of glucocorticoid receptors, (2) particle binding to the cell membrane, and (3) DNA damage induced γ-H2AX foci.",

keywords = "image guided cell sorting, imaging flow cytometry, machine learning, microfluidic",

author = "Yi Gu and Zhang, {Alex Ce} and Yuanyuan Han and Jie Li and Chen, {Clark C} and Lo, {Yu Hwa}",

note = "Funding Information: Grant sponsor: National Institutes of Health, Grant numberR44DA042636; Grant sponsor: National Science Foun dation, Grant numberECCS-1542148 Additional Supporting Information may be found in the online version of this article. Funding Information: This work was performed in part at the San Diego Nanotechnology Infrastructure (SDNI) of UCSD, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (Grant ECCS-1542148). Research reported in this publication was supported by the National Institutes of Health under award number R44DA042636. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Yuhwa Lo has an equity interest in NanoCellect Biomedical as a co-founder and a member of the company{\textquoteright}s Scientific Advisory Board. NanoCellect may potentially benefit from the results of this research. Publisher Copyright: {\textcopyright} 2019 International Society for Advancement of Cytometry",

year = "2019",

month = may,

doi = "10.1002/cyto.a.23764",

language = "English (US)",

volume = "95",

pages = "499--509",

journal = "Cytometry. Part A : the journal of the International Society for Analytical Cytology",

issn = "1552-4922",

publisher = "Wiley-Liss Inc.",

number = "5",

}

TY - JOUR

T1 - Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification

AU - Gu, Yi

AU - Zhang, Alex Ce

AU - Han, Yuanyuan

AU - Li, Jie

AU - Chen, Clark C

AU - Lo, Yu Hwa

N1 - Funding Information: Grant sponsor: National Institutes of Health, Grant numberR44DA042636; Grant sponsor: National Science Foun dation, Grant numberECCS-1542148 Additional Supporting Information may be found in the online version of this article. Funding Information: This work was performed in part at the San Diego Nanotechnology Infrastructure (SDNI) of UCSD, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (Grant ECCS-1542148). Research reported in this publication was supported by the National Institutes of Health under award number R44DA042636. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Yuhwa Lo has an equity interest in NanoCellect Biomedical as a co-founder and a member of the company’s Scientific Advisory Board. NanoCellect may potentially benefit from the results of this research. Publisher Copyright: © 2019 International Society for Advancement of Cytometry

PY - 2019/5

Y1 - 2019/5

N2 - Cell classification based on phenotypical, spatial, and genetic information greatly advances our understanding of the physiology and pathology of biological systems. Technologies derived from next generation sequencing and fluorescent activated cell sorting are cornerstones for cell- and genomic-based assays supporting cell classification and mapping. However, there exists a deficiency in technology space to rapidly isolate cells based on high content image information. Fluorescence-activated cell sorting can only resolve cell-to-cell variation in fluorescence and optical scattering. Utilizing microfluidics, photonics, computation microscopy, real-time image processing and machine learning, we demonstrate an image-guided cell sorting and classification system possessing the high throughput of flow cytometer and high information content of microscopy. We demonstrate the utility of this technology in cell sorting based on (1) nuclear localization of glucocorticoid receptors, (2) particle binding to the cell membrane, and (3) DNA damage induced γ-H2AX foci.

AB - Cell classification based on phenotypical, spatial, and genetic information greatly advances our understanding of the physiology and pathology of biological systems. Technologies derived from next generation sequencing and fluorescent activated cell sorting are cornerstones for cell- and genomic-based assays supporting cell classification and mapping. However, there exists a deficiency in technology space to rapidly isolate cells based on high content image information. Fluorescence-activated cell sorting can only resolve cell-to-cell variation in fluorescence and optical scattering. Utilizing microfluidics, photonics, computation microscopy, real-time image processing and machine learning, we demonstrate an image-guided cell sorting and classification system possessing the high throughput of flow cytometer and high information content of microscopy. We demonstrate the utility of this technology in cell sorting based on (1) nuclear localization of glucocorticoid receptors, (2) particle binding to the cell membrane, and (3) DNA damage induced γ-H2AX foci.

KW - image guided cell sorting

KW - imaging flow cytometry

KW - machine learning

KW - microfluidic

UR - http://www.scopus.com/inward/record.url?scp=85063999801&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85063999801&partnerID=8YFLogxK

U2 - 10.1002/cyto.a.23764

DO - 10.1002/cyto.a.23764

M3 - Article

C2 - 30958640

AN - SCOPUS:85063999801

VL - 95

SP - 499

EP - 509

JO - Cytometry. Part A : the journal of the International Society for Analytical Cytology

JF - Cytometry. Part A : the journal of the International Society for Analytical Cytology

SN - 1552-4922

IS - 5

ER -

Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification

Abstract

Bibliographical note

Keywords

Access

Other files and links

Cite this