In silco mapping of ESTs from the Turkey (Meleagris gallopavo)

Kent Reed; Todd P Knutson; Stacy B. Krueth; Laura R. Sullivan; Lee D. Chaves

doi:10.1080/10495390500261470

In silco mapping of ESTs from the Turkey (Meleagris gallopavo)

Kent Reed, Todd P Knutson, Stacy B. Krueth, Laura R. Sullivan, Lee D. Chaves

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

Sequence similarity was used to predict the position of expressed sequence tags (ESTs) in the genome of the turkey (Meleagris gallopavo). Turkey EST sequences were compared with the draft assembly of the chicken whole-genome sequence and the chicken EST data-base by BLASTN. Among the 877 ESTs examined, 788 had significant matches in the chicken genome sequence. Position of orthologous sequences in the chicken genome and the predicted position of the EST loci in the turkey genome are presented. Genetic assignments suggest a high level of accuracy for the COMPASS predictions.

Original language	English (US)
Pages (from-to)	81-102
Number of pages	22
Journal	Animal Biotechnology
Volume	16
Issue number	2
DOIs	https://doi.org/10.1080/10495390500261470
State	Published - 2005

Bibliographical note

Funding Information:
This research was supported in part by grants from the Cooperative State Research, Education and Extension Service, U.S. Department of Agriculture (2001-35205-9494 and 2004-35205-14217).

Keywords

COMPASS
Comparative map
EST
Turkey

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10.1080/10495390500261470

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abstract = "Sequence similarity was used to predict the position of expressed sequence tags (ESTs) in the genome of the turkey (Meleagris gallopavo). Turkey EST sequences were compared with the draft assembly of the chicken whole-genome sequence and the chicken EST data-base by BLASTN. Among the 877 ESTs examined, 788 had significant matches in the chicken genome sequence. Position of orthologous sequences in the chicken genome and the predicted position of the EST loci in the turkey genome are presented. Genetic assignments suggest a high level of accuracy for the COMPASS predictions.",

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AU - Reed, Kent

AU - Knutson, Todd P

AU - Krueth, Stacy B.

AU - Sullivan, Laura R.

AU - Chaves, Lee D.

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N2 - Sequence similarity was used to predict the position of expressed sequence tags (ESTs) in the genome of the turkey (Meleagris gallopavo). Turkey EST sequences were compared with the draft assembly of the chicken whole-genome sequence and the chicken EST data-base by BLASTN. Among the 877 ESTs examined, 788 had significant matches in the chicken genome sequence. Position of orthologous sequences in the chicken genome and the predicted position of the EST loci in the turkey genome are presented. Genetic assignments suggest a high level of accuracy for the COMPASS predictions.

AB - Sequence similarity was used to predict the position of expressed sequence tags (ESTs) in the genome of the turkey (Meleagris gallopavo). Turkey EST sequences were compared with the draft assembly of the chicken whole-genome sequence and the chicken EST data-base by BLASTN. Among the 877 ESTs examined, 788 had significant matches in the chicken genome sequence. Position of orthologous sequences in the chicken genome and the predicted position of the EST loci in the turkey genome are presented. Genetic assignments suggest a high level of accuracy for the COMPASS predictions.

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KW - EST

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In silco mapping of ESTs from the Turkey (Meleagris gallopavo)

Abstract

Bibliographical note

Keywords

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