Improving infrastructure for pathway prediction.

Junfeng Gao, Lynda B M Ellis

Research output: Contribution to journalArticle

Abstract

The UM-BBD Pathway Prediction System (UM-PPS, http://umbbd.msi.umn.edu/predict/) predicts microbial catabolism of organic compounds. We improved UM-PPS infrastructure to improve pathway prediction results. We added the ability to allow relative reasoning and variable aerobic likelihood. One relative reasoning entry decreased choices 75% with no loss of sensitivity. Variable aerobic likelihood gives more accurate likelihood for rules triggered by substrates with certain chemical structures. Predictions are improved.

Original languageEnglish (US)
Number of pages1
JournalAMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium
StatePublished - Dec 1 2008

Cite this