Identification of transcripts potentially involved in neural tube closure using RNA sequencing

Lexy M. Kindt, Alicia R. Coughlin, Tianna R. Perosino, Haley N. Ersfeld, Marshall E Hampton, Jennifer O Liang

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

Anencephaly is a fatal human neural tube defect (NTD) in which the anterior neural tube remains open. Zebrafish embryos with reduced Nodal signaling display an open anterior neural tube phenotype that is analogous to anencephaly. Previous work from our laboratory suggests that Nodal signaling acts through induction of the head mesendoderm and mesoderm. Head mesendoderm/mesoderm then, through an unknown mechanism, promotes formation of the polarized neuroepithelium that is capable of undergoing the movements required for closure. We compared the transcriptome of embryos treated with a Nodal signaling inhibitor at sphere stage, which causes NTDs, to embryos treated at 30% epiboly, which does not cause NTDs. This screen identified over 3,000 transcripts with potential roles in anterior neurulation. Expression of several genes encoding components of tight and adherens junctions was significantly reduced, supporting the model that Nodal signaling regulates formation of the neuroepithelium. mRNAs involved in Wnt, FGF, and BMP signaling were also differentially expressed, suggesting these pathways might regulate anterior neurulation. In support of this, we found that pharmacological inhibition of FGF–receptor function causes an open anterior NTD as well as loss of mesodermal derivatives. This suggests that Nodal and FGF signaling both promote anterior neurulation through induction of head mesoderm.

Original languageEnglish (US)
Article numbere23096
JournalGenesis
Volume56
Issue number3
DOIs
StatePublished - Mar 2018

Bibliographical note

Funding Information:
The authors would like to thank Jenna Ruzich, Michael Schoenenberger, Abbygail Coyle, and Jake Billings for technical assistance. The University of Minnesota Genomics Core, especially Aaron Becker, helped with the RNA-sequencing.

Funding Information:
National Institutes of Health, Grant Number: R15 HD068176-01A1 and 2R15HD068176-02; University of Minne sota Grant in-Aid of Research, Artistry, and Scholarship

Keywords

  • RNA sequencing
  • neural tube defects
  • neurulation
  • nodal
  • zebrafish

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