Identification and characterization of two peroxidases from Lichtheimia corymbifera

Wafaa M. Abd El-Rahim; Ahmed Z. Abdel Azeiz; Hassan Moawad; Michael J. Sadowsky

doi:10.1016/j.bcab.2019.01.033

Identification and characterization of two peroxidases from Lichtheimia corymbifera

Wafaa M. Abd El-Rahim, Ahmed Z. Abdel Azeiz, Hassan Moawad, Michael J. Sadowsky

Soil, Water, and Climate

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Abstract

The fungus Lichtheimia corymbifera was isolated on mineral salt medium (MSM) supplemented with direct green azo dye as a sole carbon source and identified by sequencing the ITS1-ITS4 gene region. This fungus showed lignin peroxidase activity when grown in liquid MSM supplemented with methyl red azo dye as a sole carbon source. The lignin peroxidase was isolated by ammonium sulfate precipitation, and purified by DEAE-SephadexA50 column chromatography and gradient SDS-PAGE separation. The enzyme bands on gels were identified by reaction with pyrogallol and hydrogen peroxide, picked, and hydrolyzed by tryps in followed by amino acids sequencing by LC/MS/MS. Two different peroxidases were identified by homology to entries in the PEAKS database and Uni Prot repository. The first (accession number A0A068RV79) was comprised of 360 AA residues with MW 40.16KD. The second (accession number A0A068S1N8) was comprised of 271 AA with a MW 30.91KD. A kinetic study of the most abundant peroxidase (MW 30.91 KD) showed a maximum enzyme activity (V _max ) (10.23 mg/ml/20 s) and the lowest K _m value (0.33 μM hydrogen peroxide) at 0.8 μM of hydrogen peroxide and 32 μM of pyrogallol. The kinetics of this enzyme was reported for the first time in this work; furthermore, no previous articles reported the ability of L. corymbifera to degrade the azo dyes.

Original language	English (US)
Article number	100995
Journal	Biocatalysis and Agricultural Biotechnology
Volume	18
DOIs	https://doi.org/10.1016/j.bcab.2019.01.033
State	Published - Mar 2019

Bibliographical note

Funding Information:
This study was funded, in part, by a grant from the US-Egypt Joint fund , project No 4462 , and by a grant from the University of Minnesota Agricultural Experiment Station . The funding sources had no involvement or role in the study design; in the collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication.

Keywords

Azo dye
Direct green
L. corymbifera
Methyl red
Peroxidase

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@article{3c45d68b567d4d9283f9cc2202153017,

title = "Identification and characterization of two peroxidases from Lichtheimia corymbifera",

abstract = " The fungus Lichtheimia corymbifera was isolated on mineral salt medium (MSM) supplemented with direct green azo dye as a sole carbon source and identified by sequencing the ITS1-ITS4 gene region. This fungus showed lignin peroxidase activity when grown in liquid MSM supplemented with methyl red azo dye as a sole carbon source. The lignin peroxidase was isolated by ammonium sulfate precipitation, and purified by DEAE-SephadexA50 column chromatography and gradient SDS-PAGE separation. The enzyme bands on gels were identified by reaction with pyrogallol and hydrogen peroxide, picked, and hydrolyzed by tryps in followed by amino acids sequencing by LC/MS/MS. Two different peroxidases were identified by homology to entries in the PEAKS database and Uni Prot repository. The first (accession number A0A068RV79) was comprised of 360 AA residues with MW 40.16KD. The second (accession number A0A068S1N8) was comprised of 271 AA with a MW 30.91KD. A kinetic study of the most abundant peroxidase (MW 30.91 KD) showed a maximum enzyme activity (V max ) (10.23 mg/ml/20 s) and the lowest K m value (0.33 μM hydrogen peroxide) at 0.8 μM of hydrogen peroxide and 32 μM of pyrogallol. The kinetics of this enzyme was reported for the first time in this work; furthermore, no previous articles reported the ability of L. corymbifera to degrade the azo dyes. ",

keywords = "Azo dye, Direct green, L. corymbifera, Methyl red, Peroxidase",

author = "{Abd El-Rahim}, {Wafaa M.} and {Abdel Azeiz}, {Ahmed Z.} and Hassan Moawad and Sadowsky, {Michael J.}",

note = "Funding Information: This study was funded, in part, by a grant from the US-Egypt Joint fund , project No 4462 , and by a grant from the University of Minnesota Agricultural Experiment Station . The funding sources had no involvement or role in the study design; in the collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication.",

year = "2019",

month = mar,

doi = "10.1016/j.bcab.2019.01.033",

language = "English (US)",

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journal = "Biocatalysis and Agricultural Biotechnology",

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TY - JOUR

T1 - Identification and characterization of two peroxidases from Lichtheimia corymbifera

AU - Abd El-Rahim, Wafaa M.

AU - Abdel Azeiz, Ahmed Z.

AU - Moawad, Hassan

AU - Sadowsky, Michael J.

N1 - Funding Information: This study was funded, in part, by a grant from the US-Egypt Joint fund , project No 4462 , and by a grant from the University of Minnesota Agricultural Experiment Station . The funding sources had no involvement or role in the study design; in the collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication.

PY - 2019/3

Y1 - 2019/3

N2 - The fungus Lichtheimia corymbifera was isolated on mineral salt medium (MSM) supplemented with direct green azo dye as a sole carbon source and identified by sequencing the ITS1-ITS4 gene region. This fungus showed lignin peroxidase activity when grown in liquid MSM supplemented with methyl red azo dye as a sole carbon source. The lignin peroxidase was isolated by ammonium sulfate precipitation, and purified by DEAE-SephadexA50 column chromatography and gradient SDS-PAGE separation. The enzyme bands on gels were identified by reaction with pyrogallol and hydrogen peroxide, picked, and hydrolyzed by tryps in followed by amino acids sequencing by LC/MS/MS. Two different peroxidases were identified by homology to entries in the PEAKS database and Uni Prot repository. The first (accession number A0A068RV79) was comprised of 360 AA residues with MW 40.16KD. The second (accession number A0A068S1N8) was comprised of 271 AA with a MW 30.91KD. A kinetic study of the most abundant peroxidase (MW 30.91 KD) showed a maximum enzyme activity (V max ) (10.23 mg/ml/20 s) and the lowest K m value (0.33 μM hydrogen peroxide) at 0.8 μM of hydrogen peroxide and 32 μM of pyrogallol. The kinetics of this enzyme was reported for the first time in this work; furthermore, no previous articles reported the ability of L. corymbifera to degrade the azo dyes.

AB - The fungus Lichtheimia corymbifera was isolated on mineral salt medium (MSM) supplemented with direct green azo dye as a sole carbon source and identified by sequencing the ITS1-ITS4 gene region. This fungus showed lignin peroxidase activity when grown in liquid MSM supplemented with methyl red azo dye as a sole carbon source. The lignin peroxidase was isolated by ammonium sulfate precipitation, and purified by DEAE-SephadexA50 column chromatography and gradient SDS-PAGE separation. The enzyme bands on gels were identified by reaction with pyrogallol and hydrogen peroxide, picked, and hydrolyzed by tryps in followed by amino acids sequencing by LC/MS/MS. Two different peroxidases were identified by homology to entries in the PEAKS database and Uni Prot repository. The first (accession number A0A068RV79) was comprised of 360 AA residues with MW 40.16KD. The second (accession number A0A068S1N8) was comprised of 271 AA with a MW 30.91KD. A kinetic study of the most abundant peroxidase (MW 30.91 KD) showed a maximum enzyme activity (V max ) (10.23 mg/ml/20 s) and the lowest K m value (0.33 μM hydrogen peroxide) at 0.8 μM of hydrogen peroxide and 32 μM of pyrogallol. The kinetics of this enzyme was reported for the first time in this work; furthermore, no previous articles reported the ability of L. corymbifera to degrade the azo dyes.

KW - Azo dye

KW - Direct green

KW - L. corymbifera

KW - Methyl red

KW - Peroxidase

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DO - 10.1016/j.bcab.2019.01.033

M3 - Article

AN - SCOPUS:85061840705

SN - 1878-8181

VL - 18

JO - Biocatalysis and Agricultural Biotechnology

JF - Biocatalysis and Agricultural Biotechnology

M1 - 100995

ER -

Identification and characterization of two peroxidases from Lichtheimia corymbifera

Abstract

Bibliographical note

Keywords

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