Herbicide-degrading α-keto acid-dependent enzyme TfdA: Metal coordination environment and mechanistic insights

Eric L. Hegg, Adam K. Whiting, Ruth E. Saari, John McCracken, Robert P. Hausinger, Lawrence Que

Research output: Contribution to journalArticlepeer-review

71 Scopus citations


TfdA is a non-heme iron enzyme which catalyzes the first step in the oxidative degradation of the widely used herbicide (2,4- dichlorophenoxy)acetate (2,4-D). Like other α-keto acid-dependent enzymes, TfdA utilizes a mononuclear Fe(II) center to activate O2 and oxidize substrate concomitant with the oxidative decarboxylation of α-ketoglutarate (α-KG). Spectroscopic analyses of various Cu(II)-substituted and Fe(II)- reconstituted TfdA complexes via electron paramagnetic resonance (EPR), electron spin-echo envelope modulation (ESEEM), and UV-vis spectroscopies have greatly expanded our knowledge of the enzyme's active site. The metal center is coordinated to two histidine residues as indicated by the presence of a five-line pattern in the Cu(II) EPR signal, for which superhyperfine splitting is attributed to two equivalent nitrogen donor atoms from two imidazoles. Furthermore, a comparison of the ESEEM spectra obtained in H2O and D2O demonstrates that the metal maintains several solvent-accessible sites, a conclusion corroborated by the increase in multiplicity in the EPR superhyperfine splitting observed in the presence of imidazole. Addition of α-KG to the Cu-containing enzyme leads to displacement of an equatorial water on copper, as determined by ESEEM analysis. Subsequent addition of 2,4- D leads to the loss of a second water molecule, with retention of a third, axially bound water. In contrast to these results, in Fe(II)-reconstituted TfdA, the cosubstrate α-KG chelates to the metal via a C-1 carboxylate oxygen and the α-keto oxygen as revealed by characteristic absorption features in the optical spectrum of Fe-TfdA. This binding mode is maintained in the presence of substrate, although the addition of 2,4-D does alter the metal coordination environment, perhaps by creating an O2-binding site via solvent displacement. Indeed, loss of solvent to generate an open binding site upon the addition of substrate has also been suggested for the α-keto acid-dependent enzyme clavaminate synthase 2 [Zhou et al. (1998) J. Am. Chem. Soc. 120, 13539-13540]. Nitrosyl adducts of various Fe-TfdA complexes have also been investigated by optical and EPR spectroscopy. Of special interest is the tightly bound NO complex of Fe-TfdA·(α-KG)·(2,4-D), which may represent an accurate model of the initial oxygen-bound species.

Original languageEnglish (US)
Pages (from-to)16714-16726
Number of pages13
Issue number50
StatePublished - Dec 14 1999


Dive into the research topics of 'Herbicide-degrading α-keto acid-dependent enzyme TfdA: Metal coordination environment and mechanistic insights'. Together they form a unique fingerprint.

Cite this