Graphical representation methods: How well do they discriminate between homologous gene sequences?

Dwaipayan Sen; Proyasha Roy; Ashesh Nandy; Subhash C. Basak; Sukhen Das

doi:10.1016/j.chemphys.2018.07.031

Graphical representation methods: How well do they discriminate between homologous gene sequences?

Dwaipayan Sen
, Proyasha Roy
, Ashesh Nandy
, Subhash C. Basak
, Sukhen Das

Chemistry & Biochemistry

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

Graphical representation methods constitute a class of alignment-free techniques for comparative study of biomolecular sequences. In this brief commentary, we study how well some of these methods can discriminate among closely related genes.

Original language	English (US)
Pages (from-to)	156-164
Number of pages	9
Journal	Chemical Physics
Volume	513
DOIs	https://doi.org/10.1016/j.chemphys.2018.07.031
State	Published - Sep 24 2018

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Publisher Copyright:
© 2018 Elsevier B.V.

Keywords

2D and 3D methods
Discriminatory power of sequence descriptors
Flavivirus envelope genes
Globin genes
Graphical representation
Super-descriptors

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10.1016/j.chemphys.2018.07.031

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title = "Graphical representation methods: How well do they discriminate between homologous gene sequences?",

abstract = "Graphical representation methods constitute a class of alignment-free techniques for comparative study of biomolecular sequences. In this brief commentary, we study how well some of these methods can discriminate among closely related genes.",

keywords = "2D and 3D methods, Discriminatory power of sequence descriptors, Flavivirus envelope genes, Globin genes, Graphical representation, Super-descriptors",

author = "Dwaipayan Sen and Proyasha Roy and Ashesh Nandy and Basak, \{Subhash C.\} and Sukhen Das",

note = "Publisher Copyright: {\textcopyright} 2018 Elsevier B.V.",

year = "2018",

month = sep,

day = "24",

doi = "10.1016/j.chemphys.2018.07.031",

language = "English (US)",

volume = "513",

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journal = "Chemical Physics",

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T1 - Graphical representation methods

T2 - How well do they discriminate between homologous gene sequences?

AU - Sen, Dwaipayan

AU - Roy, Proyasha

AU - Nandy, Ashesh

AU - Basak, Subhash C.

AU - Das, Sukhen

PY - 2018/9/24

Y1 - 2018/9/24

N2 - Graphical representation methods constitute a class of alignment-free techniques for comparative study of biomolecular sequences. In this brief commentary, we study how well some of these methods can discriminate among closely related genes.

AB - Graphical representation methods constitute a class of alignment-free techniques for comparative study of biomolecular sequences. In this brief commentary, we study how well some of these methods can discriminate among closely related genes.

KW - 2D and 3D methods

KW - Discriminatory power of sequence descriptors

KW - Flavivirus envelope genes

KW - Globin genes

KW - Graphical representation

KW - Super-descriptors

UR - https://www.scopus.com/pages/publications/85050825761

UR - https://www.scopus.com/pages/publications/85050825761#tab=citedBy

U2 - 10.1016/j.chemphys.2018.07.031

DO - 10.1016/j.chemphys.2018.07.031

M3 - Article

AN - SCOPUS:85050825761

SN - 0301-0104

VL - 513

SP - 156

EP - 164

JO - Chemical Physics

JF - Chemical Physics

ER -

Graphical representation methods: How well do they discriminate between homologous gene sequences?

Abstract

Bibliographical note

Keywords

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