Genetic control of kernel compositional variation in a maize diversity panel

Jonathan S Renk, Amanda M Gilbert, Travis J. Hattery, Christine H. O'Connor, Patrick Monnahan, Nickolas Anderson, Amanda J. Waters, David P. Eickholt, Sherry A. Flint-Garcia, Marna D. Yandeau-Nelson, Candice N. Hirsch

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Maize (Zea mays L.) is a multi-purpose row crop grown worldwide, which, over time, has often been bred for increased yield at the detriment of lower composition grain quality. Some knowledge of the genetic factors that affect quality traits has been discovered through the study of classical maize mutants; however, much of the underlying genetic control of these traits and the interaction between these traits remains unknown. To better understand variation that exists for grain compositional traits in maize, we evaluated 501 diverse temperate maize inbred lines in five unique environments and predicted 16 compositional traits (e.g., carbohydrates, protein, and starch) based on the output of near-infrared (NIR) spectroscopy. Phenotypic analysis found substantial variation for compositional traits and the majority of variation was explained by genetic and environmental factors. Correlations and trade-offs among traits in different maize types (e.g., dent, sweetcorn, and popcorn) were explored, and significant differences and meaningful correlations were detected. In total, 22.9–71.0% of the phenotypic variation across these traits could be explained using 2,386,666 single nucleotide polymorphism (SNP) markers generated from whole-genome resequencing data. A genome-wide association study (GWAS) was conducted using these same markers and found 72 statistically significant SNPs for 11 compositional traits. This study provides valuable insights in the phenotypic variation and genetic control underlying compositional traits that can be used in breeding programs for improving maize grain quality.

Original languageEnglish (US)
JournalPlant Genome
Early online dateJul 1 2021
StatePublished - Jul 1 2021

Bibliographical note

Funding Information:
This work was funded in part by NSF IOS‐1546272 to CNH and MDY‐N, PepsiCo, Inc. to CNH, the Iowa Agriculture and Home Economics Research Station Project IOW03649 to MDY‐N, and USDA–ARS base funds to SF‐G. The authors acknowledge the Minnesota Supercomputing Institute (MSI) at the University of Minnesota for providing resources that contributed to the research results reported in this paper.

Publisher Copyright:
© 2021 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.

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