Functional imaging with cellular resolution reveals precise microarchitecture in visual cortex

Kenichi Ohki, Sooyoung Chung, Yeang H. Ch'ng, Prakash Kara, R. Clay Reid

Research output: Contribution to journalReview articlepeer-review

892 Scopus citations


Neurons in the cerebral cortex are organized into anatomical columns, with ensembles of cells arranged from the surface to the white matter. Within a column, neurons often share functional properties, such as selectivity for stimulus orientation; columns with distinct properties, such as different preferred orientations, tile the cortical surface in orderly patterns. This functional architecture was discovered with the relatively sparse sampling of microelectrode recordings. Optical imaging of membrane voltage or metabolic activity elucidated the overall geometry of functional maps, but is averaged over many cells (resolution >100 μm). Consequently, the purity of functional domains and the precision of the borders between them could not be resolved. Here, we labelled thousands of neurons of the visual cortex with a calcium-sensitive indicator in vivo. We then imaged the activity of neuronal populations at single-cell resolution with two-photon microscopy up to a depth of 400 μm. In rat primary visual cortex, neurons had robust orientation selectivity but there was no discernible local structure; neighbouring neurons often responded to different orientations. In area 18 of cat visual cortex, functional maps were organized at a fine scale. Neurons with opposite preferences for stimulus direction were segregated with extraordinary spatial precision in three dimensions, with columnar borders one to two cells wide. These results indicate that cortical maps can be built with single-cell precision.

Original languageEnglish (US)
Pages (from-to)597-603
Number of pages7
Issue number7026
StatePublished - Feb 10 2005

Bibliographical note

Funding Information:
Acknowledgements We thank E. Takahashi for involvement in the first set of experiments; B. Sabatini, W. Regehr, R. Yuste and F. Engert for discussions and technical advice; S. Yurgenson for technical support and programming; A. Kerlin and J. Leong for programming; A. Vagodny for surgical assistance; and R. Yuste and J. Pezaris for comments on the manuscript. This work was supported by grants from the NEI and fellowships from the Uehara Foundation (K.O.), the Goldenson Fund (S.C.) and HHMI (Y.H.C.).


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