Fully-automated segmentation of fluid regions in exudative age-related macular degeneration subjects

Kernel graph cut in neutrosophic domain

Abdolreza Rashno, Behzad Nazari, Dara Koozekanani, Paul M. Drayna, Saeed Sadri, Hossein Rabbani, Keshab K Parhi

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

A fully-automated method based on graph shortest path, graph cut and neutrosophic (NS) sets is presented for fluid segmentation in OCT volumes for exudative age related macular degeneration (EAMD) subjects. The proposed method includes three main steps: 1) The inner limiting membrane (ILM) and the retinal pigment epithelium (RPE) layers are segmented using proposed methods based on graph shortest path in NS domain. A flattened RPE boundary is calculated such that all three types of fluid regions, intra-retinal, sub-retinal and sub-RPE, are located above it. 2) Seed points for fluid (object) and tissue (background) are initialized for graph cut by the proposed automated method. 3) A new cost function is proposed in kernel space, and is minimized with max-flow/min-cut algorithms, leading to a binary segmentation. Important properties of the proposed steps are proven and quantitative performance of each step is analyzed separately. The proposed method is evaluated using a publicly available dataset referred as Optima and a local dataset from the UMN clinic. For fluid segmentation in 2D individual slices, the proposed method outperforms the previously proposed methods by 18%, 21% with respect to the dice coefficient and sensitivity, respectively, on the Optima dataset, and by 16%, 11% and 12% with respect to the dice coefficient, sensitivity and precision, respectively, on the local UMN dataset. Finally, for 3D fluid volume segmentation, the proposed method achieves true positive rate (TPR) and false positive rate (FPR) of 90% and 0.74%, respectively, with a correlation of 95% between automated and expert manual segmentations using linear regression analysis.

Original languageEnglish (US)
Article numbere0186949
JournalPloS one
Volume12
Issue number10
DOIs
StatePublished - Oct 1 2017

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Macular Degeneration
Retinal Pigments
Fluids
seeds
Retinal Pigment Epithelium
epithelium
pigments
methodology
Linear regression
Regression analysis
Cost functions
Seed
macular degeneration
fluids
Tissue
Membranes
Linear Models
Seeds
regression analysis
Regression Analysis

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Fully-automated segmentation of fluid regions in exudative age-related macular degeneration subjects : Kernel graph cut in neutrosophic domain. / Rashno, Abdolreza; Nazari, Behzad; Koozekanani, Dara; Drayna, Paul M.; Sadri, Saeed; Rabbani, Hossein; Parhi, Keshab K.

In: PloS one, Vol. 12, No. 10, e0186949, 01.10.2017.

Research output: Contribution to journalArticle

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