TY - JOUR
T1 - Extension of DNA in a nanochannel as a rod-to-coil transition
AU - Tree, Douglas R.
AU - Wang, Yanwei
AU - Dorfman, Kevin D.
PY - 2013/5/13
Y1 - 2013/5/13
N2 - DNA confinement in nanochannels is emerging as an important tool for genomics and an excellent platform for testing the theories of confined wormlike polymers. Using cutting-edge, large scale Monte Carlo simulations of asymptotically long wormlike chains, we show that, in analogy to the rod-to-coil transition for free wormlike polymers, there exists a universal, Gauss-de Gennes regime that connects the classic Odijk and de Gennes regimes of channel-confined chains. For DNA in a nanochannel, this Gauss-de Gennes regime spans practically the entire experimentally relevant range of channel sizes, including the nanochannels used in an incipient genome mapping technology.
AB - DNA confinement in nanochannels is emerging as an important tool for genomics and an excellent platform for testing the theories of confined wormlike polymers. Using cutting-edge, large scale Monte Carlo simulations of asymptotically long wormlike chains, we show that, in analogy to the rod-to-coil transition for free wormlike polymers, there exists a universal, Gauss-de Gennes regime that connects the classic Odijk and de Gennes regimes of channel-confined chains. For DNA in a nanochannel, this Gauss-de Gennes regime spans practically the entire experimentally relevant range of channel sizes, including the nanochannels used in an incipient genome mapping technology.
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U2 - 10.1103/PhysRevLett.110.208103
DO - 10.1103/PhysRevLett.110.208103
M3 - Article
C2 - 25167455
AN - SCOPUS:84877792467
SN - 0031-9007
VL - 110
JO - Physical review letters
JF - Physical review letters
IS - 20
M1 - 208103
ER -