Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria

Jeremy D. Glasner; Guy Plunkett; Bradley D. Anderson; David J. Baumler; Bryan S. Biehl; Valerie Burland; Eric L. Cabot; Aaron E. Darling; Bob Mau; Eric C. Neeno-Eckwall; David Pot; Yu Qiu; Anna I. Rissman; Sara Worzella; Sam Zaremba; Joel Fedorko; Tom Hampton; Paul Liss; Michael Rusch; Matthew Shaker; Lorie Shaull; Panna Shetty; Silpa Thotakura; Jon Whitmore; Frederick R. Blattner; John M. Greene; Nicole T. Perna

doi:10.1093/nar/gkm973

Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria

Jeremy D. Glasner, Guy Plunkett, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Tom Hampton, Paul Liss, Michael Rusch, Matthew ShakerLorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna

Food Science and Nutrition

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Abstract

ERIC, the Enteropathogen Resource Integration Center (www.ericbrc.org), is a new web portal serving as a rich source of information about enterobacteria on the NIAID established list of Select Agents related to biodefense - diarrheagenic Escherichia coli, Shigella spp., Salmonella spp., Yersinia enterocolitica and Yersinia pestis. More than 30 genomes have been completely sequenced, many more exist in draft form and additional projects are underway. These organisms are increasingly the focus of studies using high-throughput experimental technologies and computational approaches. This wealth of data provides unprecedented opportunities for understanding the workings of basic biological systems and discovery of novel targets for development of vaccines, diagnostics and therapeutics. ERIC brings information together from disparate sources and supports data comparison across different organisms, analysis of varying data types and visualization of analyses in human and computer-readable formats.

Original language	English (US)
Pages (from-to)	D519-D523
Journal	Nucleic acids research
Volume	36
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkm973
State	Published - Jan 2008

Bibliographical note

Funding Information:
We thank M. Chandler for providing a copy of the ISfinder database. The ERIC Bioinformatics Resource Center has been wholly funded with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN266200400040C. Funding to pay the Open Access publication charges for this article was provided by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN266200400040C.

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Glasner, J. D., Plunkett, G., Anderson, B. D., Baumler, D. J., Biehl, B. S., Burland, V., Cabot, E. L., Darling, A. E., Mau, B., Neeno-Eckwall, E. C., Pot, D., Qiu, Y., Rissman, A. I., Worzella, S., Zaremba, S., Fedorko, J., Hampton, T., Liss, P., Rusch, M., ... Perna, N. T. (2008). Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic acids research, 36(SUPPL. 1), D519-D523. https://doi.org/10.1093/nar/gkm973

Enteropathogen Resource Integration Center (ERIC) : Bioinformatics support for research on biodefense-relevant enterobacteria. / Glasner, Jeremy D.; Plunkett, Guy; Anderson, Bradley D.; Baumler, David J.; Biehl, Bryan S.; Burland, Valerie; Cabot, Eric L.; Darling, Aaron E.; Mau, Bob; Neeno-Eckwall, Eric C.; Pot, David; Qiu, Yu; Rissman, Anna I.; Worzella, Sara; Zaremba, Sam; Fedorko, Joel; Hampton, Tom; Liss, Paul; Rusch, Michael; Shaker, Matthew; Shaull, Lorie; Shetty, Panna; Thotakura, Silpa; Whitmore, Jon; Blattner, Frederick R.; Greene, John M.; Perna, Nicole T.

In: Nucleic acids research, Vol. 36, No. SUPPL. 1, 01.2008, p. D519-D523.

Research output: Contribution to journal › Article › peer-review

Glasner, JD, Plunkett, G, Anderson, BD, Baumler, DJ, Biehl, BS, Burland, V, Cabot, EL, Darling, AE, Mau, B, Neeno-Eckwall, EC, Pot, D, Qiu, Y, Rissman, AI, Worzella, S, Zaremba, S, Fedorko, J, Hampton, T, Liss, P, Rusch, M, Shaker, M, Shaull, L, Shetty, P, Thotakura, S, Whitmore, J, Blattner, FR, Greene, JM & Perna, NT 2008, 'Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteria', Nucleic acids research, vol. 36, no. SUPPL. 1, pp. D519-D523. https://doi.org/10.1093/nar/gkm973

Glasner, Jeremy D. ; Plunkett, Guy ; Anderson, Bradley D. ; Baumler, David J. ; Biehl, Bryan S. ; Burland, Valerie ; Cabot, Eric L. ; Darling, Aaron E. ; Mau, Bob ; Neeno-Eckwall, Eric C. ; Pot, David ; Qiu, Yu ; Rissman, Anna I. ; Worzella, Sara ; Zaremba, Sam ; Fedorko, Joel ; Hampton, Tom ; Liss, Paul ; Rusch, Michael ; Shaker, Matthew ; Shaull, Lorie ; Shetty, Panna ; Thotakura, Silpa ; Whitmore, Jon ; Blattner, Frederick R. ; Greene, John M. ; Perna, Nicole T. / Enteropathogen Resource Integration Center (ERIC) : Bioinformatics support for research on biodefense-relevant enterobacteria. In: Nucleic acids research. 2008 ; Vol. 36, No. SUPPL. 1. pp. D519-D523.

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