Discovery and characterization of terpenoid biosynthetic pathways of fungi

Grayson T. Wawrzyn, Sarah E. Bloch, Claudia Schmidt-Dannert

Research output: Chapter in Book/Report/Conference proceedingChapter

21 Scopus citations

Abstract

Fungi produce a myriad of terpenoids with a broad range of biological activities, many of which can be adapted to human use. This requires knowledge of the enzymes responsible for the biosynthesis of these compounds. Herein, we describe strategies for identification and characterization of putative biosynthetic genes, structural examination of important pathway enzymes with a focus on altering activity, and identification of biosynthetic clusters, and genome mining for yet-to-be-discovered pathways. Fungi are a particularly attractive class of organism for terpenoid pathway discovery, as they often cluster their biosynthetic genes. The affordability of genome sequencing and the relatively small size of fungal genomes further simplify this process. While only a select few fungal strains are genetically tractable, many terpenoid biosynthetic genes are functional in Escherichia coli and Saccharomyces cerevisiae, allowing easy characterization. Identification of new terpenoid biosynthetic pathways has the potential to uncover new pharmaceutical compounds and establish new strategies for metabolic engineering.

Original languageEnglish (US)
Title of host publicationMethods in Enzymology
PublisherAcademic Press Inc.
Pages83-105
Number of pages23
DOIs
StatePublished - 2012

Publication series

NameMethods in Enzymology
Volume515
ISSN (Print)0076-6879
ISSN (Electronic)1557-7988

Keywords

  • Ascomycota
  • Basidiomycota
  • Biosynthetic gene cluster
  • Fungi
  • Genome
  • Secondary metabolism
  • Terpene synthase
  • Terpenoid

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