Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation

Maryse Lapierre-Landry; Yehe Liu; Mahdi Bayat; David L. Wilson; Michael W. Jenkins

doi:10.1364/BODA.2023.DTh1A.3

Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation

Maryse Lapierre-Landry, Yehe Liu, Mahdi Bayat, David L. Wilson, Michael W. Jenkins

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

We propose digital labeling, a method for automated, three-dimensional segmentation of blood vessels without vascular contrast agents. Our deep learning approach greatly simplifies the sample preparation required for 3D microscopy and accelerate image post-processing.

Original language	English (US)
Title of host publication	Bio-Optics
Subtitle of host publication	Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023
Publisher	Optical Society of America
ISBN (Electronic)	9781957171210
DOIs	https://doi.org/10.1364/BODA.2023.DTh1A.3
State	Published - 2023
Externally published	Yes
Event	Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023 - Part of Optica Biophotonics Congress: Optics in the Life Sciences - Vancouver, Canada Duration: Apr 24 2023 → Apr 27 2023

Publication series

Name	Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023

Conference

Conference	Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023 - Part of Optica Biophotonics Congress: Optics in the Life Sciences
Country/Territory	Canada
City	Vancouver
Period	4/24/23 → 4/27/23

Bibliographical note

Publisher Copyright:
© Optica Publishing Group 2023, © 2023 The Author(s)

Publisher link

10.1364/BODA.2023.DTh1A.3

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Lapierre-Landry, M., Liu, Y., Bayat, M., Wilson, D. L., & Jenkins, M. W. (2023). Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation. In Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023 (Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023). Optical Society of America. https://doi.org/10.1364/BODA.2023.DTh1A.3

Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation. / Lapierre-Landry, Maryse; Liu, Yehe; Bayat, Mahdi et al.
Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023. Optical Society of America, 2023. (Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Lapierre-Landry, M, Liu, Y, Bayat, M, Wilson, DL & Jenkins, MW 2023, Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation. in Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023. Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023, Optical Society of America, Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023 - Part of Optica Biophotonics Congress: Optics in the Life Sciences, Vancouver, Canada, 4/24/23. https://doi.org/10.1364/BODA.2023.DTh1A.3

Lapierre-Landry M, Liu Y, Bayat M, Wilson DL, Jenkins MW. Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation. In Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023. Optical Society of America. 2023. (Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023). doi: 10.1364/BODA.2023.DTh1A.3

Lapierre-Landry, Maryse ; Liu, Yehe ; Bayat, Mahdi et al. / Digital Labeling of the Vasculature : Toward Label-Free and Labor-Free Vessel Segmentation. Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023. Optical Society of America, 2023. (Bio-Optics: Design and Application in Proceedings Biophotonics Congress: Optics in the Life Sciences 2023, OMA, NTM, BODA, OMP, BRAIN 2023).

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Digital Labeling of the Vasculature: Toward Label-Free and Labor-Free Vessel Segmentation

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