DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

Steven B. Cannon, Alexander Kozik, Brian Chan, Richard Michelmore, Nevin D Young

Research output: Contribution to journalArticlepeer-review

50 Scopus citations

Abstract

The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny blocks and to generate graphical and text output quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity.

Original languageEnglish (US)
Article numberR68
JournalGenome biology
Volume4
Issue number10
DOIs
StatePublished - 2003

Bibliographical note

Publisher Copyright:
© 2003, Cannon et al.; licensee BioMed Central Ltd.

Keywords

  • Arabidopsis Chromosome
  • Collinear Region
  • Compression Factor
  • Segmental Duplication
  • Synteny Block

Fingerprint

Dive into the research topics of 'DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization'. Together they form a unique fingerprint.

Cite this