Development of VNTR markers for two Fusarium graminearum clade species

H. Suga; L. R. Gale; H C Kistler

doi:10.1111/j.1471-8286.2004.00703.x

Development of VNTR markers for two Fusarium graminearum clade species

H. Suga, L. R. Gale, H C Kistler

Plant Pathology

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Abstract

Using a bioinformatics approach, we developed 10 variable number of tandem repeat (VNTR) markers for Fusarium graminearum and Fusarium asiaticum useful for population genetic studies. Repeat sequences in the genome sequence of F. graminearum were identified by a tandem repeat finding program. Length polymorphisms at 54 loci were examined for five strains each from the United States, Italy and China. From these 54 loci, 10 were selected based on polymorphisms detected across species, ease of scoring, and their dispersed location in the genome.

Original language	English (US)
Pages (from-to)	468-470
Number of pages	3
Journal	Molecular Ecology Notes
Volume	4
Issue number	3
DOIs	https://doi.org/10.1111/j.1471-8286.2004.00703.x
State	Published - Sep 2004

Keywords

Bioinformatics
Fusarium
Population genetics
VNTR

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10.1111/j.1471-8286.2004.00703.x

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abstract = "Using a bioinformatics approach, we developed 10 variable number of tandem repeat (VNTR) markers for Fusarium graminearum and Fusarium asiaticum useful for population genetic studies. Repeat sequences in the genome sequence of F. graminearum were identified by a tandem repeat finding program. Length polymorphisms at 54 loci were examined for five strains each from the United States, Italy and China. From these 54 loci, 10 were selected based on polymorphisms detected across species, ease of scoring, and their dispersed location in the genome.",

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AU - Gale, L. R.

AU - Kistler, H C

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N2 - Using a bioinformatics approach, we developed 10 variable number of tandem repeat (VNTR) markers for Fusarium graminearum and Fusarium asiaticum useful for population genetic studies. Repeat sequences in the genome sequence of F. graminearum were identified by a tandem repeat finding program. Length polymorphisms at 54 loci were examined for five strains each from the United States, Italy and China. From these 54 loci, 10 were selected based on polymorphisms detected across species, ease of scoring, and their dispersed location in the genome.

AB - Using a bioinformatics approach, we developed 10 variable number of tandem repeat (VNTR) markers for Fusarium graminearum and Fusarium asiaticum useful for population genetic studies. Repeat sequences in the genome sequence of F. graminearum were identified by a tandem repeat finding program. Length polymorphisms at 54 loci were examined for five strains each from the United States, Italy and China. From these 54 loci, 10 were selected based on polymorphisms detected across species, ease of scoring, and their dispersed location in the genome.

KW - Bioinformatics

KW - Fusarium

KW - Population genetics

KW - VNTR

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JO - Molecular Ecology Notes

JF - Molecular Ecology Notes

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ER -

Development of VNTR markers for two Fusarium graminearum clade species

Abstract

Keywords

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