Abstract
Agroecosystem models that can incorporate management practices and quantify environmental effects are necessary to assess sustainability-associated food and bioenergy production across spatial scales. However, most agroecosystem models are designed for a plot scale. Tremendous computational capacity on simulations and datasets is needed when large scales of high-resolution spatial simulations are conducted. We used the message passing interface (MPI) parallel technique and developed a master-slave scheme for an agroecosystem model, EPIC on global food and bioenergy studies. Simulation performance was further enhanced by applying the Vampir framework. On a Linux-based supercomputer, Cray XT7 Titan, we used 2048 cores and successfully shortened the running time from days to 30. min for a global 30. years of modeling of a bioenergy crop at the resolution of half-degree (62,482 grids) with the message passing interface based EPIC (mpi_EPIC). The results illustrate that mpi_EPIC using parallel design can balance simulation workloads and facilitate large-scale, high-resolution analyses of agricultural production systems, management alternatives and environmental effects.
Original language | English (US) |
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Pages (from-to) | 48-54 |
Number of pages | 7 |
Journal | Computers and Electronics in Agriculture |
Volume | 111 |
DOIs | |
State | Published - Feb 1 2015 |
Externally published | Yes |
Bibliographical note
Publisher Copyright:© 2014 Elsevier B.V.
Keywords
- Bioenergy
- Food
- High performance computing (HPC)
- Message passing interface (MPI)
- Parallel design
- Sustainability