Detection and characterization of porcine bocavirus in the United States

Jinhai Huang; Sunil K. Mor; Jonathan Erber; Elyce Voss; Sagar M. Goyal

doi:10.1007/s00705-013-1972-4

Detection and characterization of porcine bocavirus in the United States

Jinhai Huang, Sunil K. Mor, Jonathan Erber, Elyce Voss, Sagar M. Goyal

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Abstract

We screened pigs (n = 203) presenting with respiratory illness or diarrhea for porcine bocavirus (PBoV); 88 (43.30%) were positive by PCR. More positives were seen in diarrhea cases (48.7%) than in respiratory cases (29.1%). Based on phylogenetic analysis of 540 nucleotides of the NS1 gene, the viruses could be divided into four possible groups. Group IV sequences did not match any GenBank sequences, while groups I, II and III gave matches with PBoV3, PBoV4 and PBoV5, respectively. The wide range (70% to 100%) of nucleotide (nt) sequence identity among strains in this study indicates high genetic diversity among porcine bocaviruses.

Original language	English (US)
Pages (from-to)	1797-1801
Number of pages	5
Journal	Archives of Virology
Volume	159
Issue number	7
DOIs	https://doi.org/10.1007/s00705-013-1972-4
State	Published - Jul 2014

Keywords

Diarrhea
Phylogenetic analysis
Porcine bocavirus

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1007/s00705-013-1972-4

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abstract = "We screened pigs (n = 203) presenting with respiratory illness or diarrhea for porcine bocavirus (PBoV); 88 (43.30%) were positive by PCR. More positives were seen in diarrhea cases (48.7%) than in respiratory cases (29.1%). Based on phylogenetic analysis of 540 nucleotides of the NS1 gene, the viruses could be divided into four possible groups. Group IV sequences did not match any GenBank sequences, while groups I, II and III gave matches with PBoV3, PBoV4 and PBoV5, respectively. The wide range (70% to 100%) of nucleotide (nt) sequence identity among strains in this study indicates high genetic diversity among porcine bocaviruses.",

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AU - Huang, Jinhai

AU - Mor, Sunil K.

AU - Erber, Jonathan

AU - Voss, Elyce

AU - Goyal, Sagar M.

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AB - We screened pigs (n = 203) presenting with respiratory illness or diarrhea for porcine bocavirus (PBoV); 88 (43.30%) were positive by PCR. More positives were seen in diarrhea cases (48.7%) than in respiratory cases (29.1%). Based on phylogenetic analysis of 540 nucleotides of the NS1 gene, the viruses could be divided into four possible groups. Group IV sequences did not match any GenBank sequences, while groups I, II and III gave matches with PBoV3, PBoV4 and PBoV5, respectively. The wide range (70% to 100%) of nucleotide (nt) sequence identity among strains in this study indicates high genetic diversity among porcine bocaviruses.

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KW - Phylogenetic analysis

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Detection and characterization of porcine bocavirus in the United States

Abstract

Keywords

UN SDGs

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