TY - JOUR
T1 - Defining linkages between the GSC and NSF's LTER program
T2 - How the Ecological Metadata Language (EML) relates to GCDML and other outcomes
AU - Gil, Inigo San
AU - Sheldon, Wade
AU - Schmidt, Tom
AU - Servilla, Mark
AU - Aguilar, Raul
AU - Gries, Corinna
AU - Gray, Tanya
AU - Field, Dawn
AU - Cole, James
AU - Pan, Jerry Yun
AU - Palanisamy, Giri
AU - Henshaw, Donald
AU - O'Brien, Margaret
AU - Kinkel, Linda
AU - McMahon, Katherine
AU - Kottmann, Renzo
AU - Amaral-Zettler, Linda
AU - Hobbie, John
AU - Goldstein, Philip
AU - Guralnick, Robert P.
AU - Brunt, James
AU - Michener, William K.
PY - 2008/6/1
Y1 - 2008/6/1
N2 - The Genomic Standards Consortium (GSC) invited a representative of the Long-Term Ecological Research (LTER) to its fifth workshop to present the Ecological Metadata Language (EML) metadata standard and its relationship to the Minimum Information about a Genome/Metagenome Sequence (MIGS/MIMS) and its implementation, the Genomic Contextual Data Markup Language (GCDML). The LTER is one of the top National Science Foundation (NSF) programs in biology since 1980, representing diverse ecosystems and creating long-term, interdisciplinary research, synthesis of information, and theory. The adoption of EML as the LTER network standard has been key to build network synthesis architectures based on high-quality standardized metadata. EML is the NSF-recognized metadata standard for LTER, and EML is a criteria used to review the LTER program progress. At the workshop, a potential crosswalk between the GCDML and EML was explored. Also, collaboration between the LTER and GSC developers was proposed to join efforts toward a common metadata cataloging designer's tool. The community adoption success of a metadata standard depends, among other factors, on the tools and trainings developed to use the standard. LTER's experience in embracing EML may help GSC to achieve similar success. A possible collaboration between LTER and GSC to provide training opportunities for GCDML and the associated tools is being explored. Finally, LTER is investigating EML enhancements to better accommodate genomics data, possibly integrating the GCDML schema into EML. All these action items have been accepted by the LTER contingent, and further collaboration between the GSC and LTER is expected.
AB - The Genomic Standards Consortium (GSC) invited a representative of the Long-Term Ecological Research (LTER) to its fifth workshop to present the Ecological Metadata Language (EML) metadata standard and its relationship to the Minimum Information about a Genome/Metagenome Sequence (MIGS/MIMS) and its implementation, the Genomic Contextual Data Markup Language (GCDML). The LTER is one of the top National Science Foundation (NSF) programs in biology since 1980, representing diverse ecosystems and creating long-term, interdisciplinary research, synthesis of information, and theory. The adoption of EML as the LTER network standard has been key to build network synthesis architectures based on high-quality standardized metadata. EML is the NSF-recognized metadata standard for LTER, and EML is a criteria used to review the LTER program progress. At the workshop, a potential crosswalk between the GCDML and EML was explored. Also, collaboration between the LTER and GSC developers was proposed to join efforts toward a common metadata cataloging designer's tool. The community adoption success of a metadata standard depends, among other factors, on the tools and trainings developed to use the standard. LTER's experience in embracing EML may help GSC to achieve similar success. A possible collaboration between LTER and GSC to provide training opportunities for GCDML and the associated tools is being explored. Finally, LTER is investigating EML enhancements to better accommodate genomics data, possibly integrating the GCDML schema into EML. All these action items have been accepted by the LTER contingent, and further collaboration between the GSC and LTER is expected.
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U2 - 10.1089/omi.2008.0015
DO - 10.1089/omi.2008.0015
M3 - Article
C2 - 18407745
AN - SCOPUS:45749117940
SN - 1536-2310
VL - 12
SP - 151
EP - 156
JO - OMICS A Journal of Integrative Biology
JF - OMICS A Journal of Integrative Biology
IS - 2
ER -