Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

John D. Chan; Dan Zhang; Xiaolong Liu; Magdalena Z. Zarowiecki; Matthew Berriman; Jonathan S Marchant

doi:10.1016/j.dib.2016.11.022

Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

John D. Chan
, Dan Zhang
, Xiaolong Liu
, Magdalena Z. Zarowiecki
, Matthew Berriman
, Jonathan S Marchant

Pharmacology

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

Abstract

This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca²⁺ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

Original language	English (US)
Pages (from-to)	1044-1047
Number of pages	4
Journal	Data in Brief
Volume	9
DOIs	https://doi.org/10.1016/j.dib.2016.11.022
State	Published - Dec 2016

Bibliographical note

Publisher Copyright:
© 2016 The Authors

Publisher link

10.1016/j.dib.2016.11.022

Find It

Find It at U of M Libraries

Cite this

@article{45198613279046cc9202c90030db815c,

title = "Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily",

abstract = "This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled {\textquoteleft}Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.",

author = "Chan, \{John D.\} and Dan Zhang and Xiaolong Liu and Zarowiecki, \{Magdalena Z.\} and Matthew Berriman and Marchant, \{Jonathan S\}",

note = "Publisher Copyright: {\textcopyright} 2016 The Authors",

year = "2016",

month = dec,

doi = "10.1016/j.dib.2016.11.022",

language = "English (US)",

volume = "9",

pages = "1044--1047",

journal = "Data in Brief",

issn = "2352-3409",

publisher = "Elsevier Inc.",

}

TY - JOUR

T1 - Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

AU - Chan, John D.

AU - Zhang, Dan

AU - Liu, Xiaolong

AU - Zarowiecki, Magdalena Z.

AU - Berriman, Matthew

AU - Marchant, Jonathan S

PY - 2016/12

Y1 - 2016/12

N2 - This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

AB - This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

UR - https://www.scopus.com/pages/publications/85030541427

UR - https://www.scopus.com/pages/publications/85030541427#tab=citedBy

U2 - 10.1016/j.dib.2016.11.022

DO - 10.1016/j.dib.2016.11.022

M3 - Article

C2 - 27909700

AN - SCOPUS:85030541427

SN - 2352-3409

VL - 9

SP - 1044

EP - 1047

JO - Data in Brief

JF - Data in Brief

ER -

Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

Abstract

Bibliographical note

Publisher link

Find It

Other files and links

Fingerprint

Cite this