To investigate the causative agent of swine diarrhea, next-generation sequencing (NGS) was performed on a porcine fecal sample. The NGS reads were assembled, which generated a complete swine Deltacoronavirus genome sequence, that of strain SDCV/USA/Illinois121/2014.
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We thank the swine producers and the clients of the University of Minnesota Veterinary Diagnostic Laboratory for their continued support. In addition, we thank Mark Diehl, Lotus Solmonson, Shannon Lopez, and Michele Leiferman for their technical assistance and Marie Culhane for her editing. Funding was provided by the University of Minnesota Veterinary Diagnostic Laboratory.