Comparative Metaproteomics to Study Environmental Changes

Sabine Matallana-Surget; Pratik D. Jagtap; Timothy J. Griffin; Mélanie Beraud; Ruddy Wattiez

doi:10.1016/B978-0-08-102268-9.00017-3

Comparative Metaproteomics to Study Environmental Changes

Sabine Matallana-Surget, Pratik D. Jagtap, Timothy J. Griffin, Mélanie Beraud, Ruddy Wattiez

Metabolic and Systems Biology (TMED)

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

Abstract

Comparative metaproteomics analyzes variations of the entire range of functions expressed by microorganisms inhabiting one specific ecosystem. Two strategies can be used to study the impact of environmental changes on microbial communities. Metaproteomics can be performed on complex natural communities or simplified artificial assemblages. In this chapter, we will discuss the past and future trends of the metaproteomics workflow as well as the advantages and limitations of each approach with a special focus on aquatic ecosystems.

Original language	English (US)
Title of host publication	Metagenomics
Subtitle of host publication	Perspectives, Methods, and Applications
Publisher	Elsevier Inc.
Pages	327-363
Number of pages	37
ISBN (Electronic)	9780128134030
ISBN (Print)	9780081022689
DOIs	https://doi.org/10.1016/B978-0-08-102268-9.00017-3
State	Published - Jan 1 2018

Keywords

Comparative metaproteomics
Data analysis
Galaxy tools
Natural and artificial microbial communities

Publisher link

10.1016/B978-0-08-102268-9.00017-3

Find It

Find It at U of M Libraries

Cite this

@inbook{91a8ad2f16aa48fe9dae69160eb3dbca,

title = "Comparative Metaproteomics to Study Environmental Changes",

abstract = "Comparative metaproteomics analyzes variations of the entire range of functions expressed by microorganisms inhabiting one specific ecosystem. Two strategies can be used to study the impact of environmental changes on microbial communities. Metaproteomics can be performed on complex natural communities or simplified artificial assemblages. In this chapter, we will discuss the past and future trends of the metaproteomics workflow as well as the advantages and limitations of each approach with a special focus on aquatic ecosystems.",

keywords = "Comparative metaproteomics, Data analysis, Galaxy tools, Natural and artificial microbial communities",

author = "Sabine Matallana-Surget and Jagtap, {Pratik D.} and Griffin, {Timothy J.} and M{\'e}lanie Beraud and Ruddy Wattiez",

year = "2018",

month = jan,

day = "1",

doi = "10.1016/B978-0-08-102268-9.00017-3",

language = "English (US)",

isbn = "9780081022689",

pages = "327--363",

booktitle = "Metagenomics",

publisher = "Elsevier Inc.",

}

TY - CHAP

T1 - Comparative Metaproteomics to Study Environmental Changes

AU - Matallana-Surget, Sabine

AU - Jagtap, Pratik D.

AU - Griffin, Timothy J.

AU - Beraud, Mélanie

AU - Wattiez, Ruddy

PY - 2018/1/1

Y1 - 2018/1/1

N2 - Comparative metaproteomics analyzes variations of the entire range of functions expressed by microorganisms inhabiting one specific ecosystem. Two strategies can be used to study the impact of environmental changes on microbial communities. Metaproteomics can be performed on complex natural communities or simplified artificial assemblages. In this chapter, we will discuss the past and future trends of the metaproteomics workflow as well as the advantages and limitations of each approach with a special focus on aquatic ecosystems.

AB - Comparative metaproteomics analyzes variations of the entire range of functions expressed by microorganisms inhabiting one specific ecosystem. Two strategies can be used to study the impact of environmental changes on microbial communities. Metaproteomics can be performed on complex natural communities or simplified artificial assemblages. In this chapter, we will discuss the past and future trends of the metaproteomics workflow as well as the advantages and limitations of each approach with a special focus on aquatic ecosystems.

KW - Comparative metaproteomics

KW - Data analysis

KW - Galaxy tools

KW - Natural and artificial microbial communities

UR - http://www.scopus.com/inward/record.url?scp=85042511990&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85042511990&partnerID=8YFLogxK

U2 - 10.1016/B978-0-08-102268-9.00017-3

DO - 10.1016/B978-0-08-102268-9.00017-3

M3 - Chapter

AN - SCOPUS:85042511990

SN - 9780081022689

SP - 327

EP - 363

BT - Metagenomics

PB - Elsevier Inc.

ER -

Comparative Metaproteomics to Study Environmental Changes

Abstract

Keywords

Publisher link

Find It

Other files and links

Fingerprint

Cite this