Comparative Metaproteomics to Study Environmental Changes

Sabine Matallana-Surget; Pratik D. Jagtap; Timothy J. Griffin; Mélanie Beraud; Ruddy Wattiez

doi:10.1016/B978-0-08-102268-9.00017-3

Comparative Metaproteomics to Study Environmental Changes

Sabine Matallana-Surget, Pratik D. Jagtap, Timothy J. Griffin, Mélanie Beraud, Ruddy Wattiez

Metabolic and Systems Biology (TMED)

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Abstract

Comparative metaproteomics analyzes variations of the entire range of functions expressed by microorganisms inhabiting one specific ecosystem. Two strategies can be used to study the impact of environmental changes on microbial communities. Metaproteomics can be performed on complex natural communities or simplified artificial assemblages. In this chapter, we will discuss the past and future trends of the metaproteomics workflow as well as the advantages and limitations of each approach with a special focus on aquatic ecosystems.

Original language	English (US)
Title of host publication	Metagenomics
Subtitle of host publication	Perspectives, Methods, and Applications
Publisher	Elsevier Inc.
Pages	327-363
Number of pages	37
ISBN (Electronic)	9780128134030
ISBN (Print)	9780081022689
DOIs	https://doi.org/10.1016/B978-0-08-102268-9.00017-3
State	Published - Jan 1 2018

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Keywords

Comparative metaproteomics
Data analysis
Galaxy tools
Natural and artificial microbial communities

Cite this

Matallana-Surget, S., Jagtap, P. D., Griffin, T. J., Beraud, M., & Wattiez, R. (2018). Comparative Metaproteomics to Study Environmental Changes. In Metagenomics: Perspectives, Methods, and Applications (pp. 327-363). Elsevier Inc.. https://doi.org/10.1016/B978-0-08-102268-9.00017-3

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Access

10.1016/B978-0-08-102268-9.00017-3