Characterization of the cutaneous mycobiota in healthy and allergic cats using next generation sequencing

Courtney Meason-Smith, Alison Diesel, Adam P. Patterson, Caitlin E. Older, Timothy J. Johnson, Joanne M. Mansell, Jan S. Suchodolski, Aline Rodrigues Hoffmann

Research output: Contribution to journalArticlepeer-review

49 Scopus citations


Background: Next generation sequencing (NGS) studies have demonstrated a diverse skin-associated microbiota and microbial dysbiosis associated with atopic dermatitis in people and in dogs. The skin of cats has yet to be investigated using NGS techniques. Hypothesis/Objectives: We hypothesized that the fungal microbiota of healthy feline skin would be similar to that of dogs, with a predominance of environmental fungi, and that fungal dysbiosis would be present on the skin of allergic cats. Animals: Eleven healthy cats and nine cats diagnosed with one or more cutaneous hypersensitivity disorders, including flea bite, food-induced and nonflea nonfood-induced hypersensitivity. Methods: Healthy cats were sampled at twelve body sites and allergic cats at six sites. DNA was isolated and Illumina sequencing was performed targeting the internal transcribed spacer region of fungi. Sequences were processed using the bioinformatics software QIIME. Results: The most abundant fungal sequences from the skin of all cats were classified as Cladosporium and Alternaria. The mucosal sites, including nostril, conjunctiva and reproductive tracts, had the fewest number of fungi, whereas the pre-aural space had the most. Allergic feline skin had significantly greater amounts of Agaricomycetes and Sordariomycetes, and significantly less Epicoccum compared to healthy feline skin. Conclusions: The skin of healthy cats appears to have a more diverse fungal microbiota compared to previous studies, and a fungal dysbiosis is noted in the skin of allergic cats. Future studies assessing the temporal stability of the skin microbiota in cats will be useful in determining whether the microbiota sequenced using NGS are colonizers or transient microbes.

Original languageEnglish (US)
Pages (from-to)71-e17
JournalVeterinary Dermatology
Issue number1
StatePublished - Feb 1 2017

Bibliographical note

Funding Information:
We would like to acknowledge Amanda Friedeck from Texas A&M Small Animal Hospital for assisting with skin swab collections, Kim Wahl for assistance with the DNA extractions and Tim Stephens for the photograph of Fleabag, the cat depicted in Figure (both from the College of Veterinary Medicine and Biomedical Sciences at Texas A&M). The owners of the cats enrolled in this study are thanked for their time and willingness to collaborate with this study.

Publisher Copyright:
© 2016 ESVD and ACVD


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